Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k18
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0228 - 13278085-13278264,13278405-13278493,13278613-13278736 30 1.6
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 30 2.1
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129... 30 2.1
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 2.7
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 29 3.6
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 29 4.8
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 29 4.8
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 4.8
11_06_0372 + 22781438-22781977 28 6.3
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096... 28 6.3
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 6.3
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 8.3
>06_02_0228 - 13278085-13278264,13278405-13278493,13278613-13278736
Length = 130
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 150 LETILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLL-KKV 326
++T LR E W ++E+ +PV D E+D+ ++ L K D Q K++
Sbjct: 2 VQTQTLRAEAWKAIKEEKRPVVYTLDEPEKDDRNNLSLSQGNLANDKARVDLMQNRGKRL 61
Query: 327 RRKVARQLSDK 359
+ +QL +K
Sbjct: 62 EAALTKQLDEK 72
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 189 LEEDWKPVDLDE-DRTEEDNEPAMTTMLSALDLKKT 293
LEE+ KP +++E DR EE+N+P +T S ++T
Sbjct: 875 LEENHKPQEVNEGDREEENNQPGASTGQSGQQQQQT 910
>01_06_0944 +
33211652-33212427,33212492-33212660,33212825-33212936,
33213061-33213159,33213237-33213394,33214911-33215062,
33215162-33215249,33215399-33215476,33215516-33215690,
33216701-33217002
Length = 702
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 132 GTKLLDLETILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTT 296
G LL++ L + +W +L + E + N P MT ++SALD + TT
Sbjct: 512 GVLLLEIAWELWKEGRWSELADPSIYNACPEHKESPINRPTMTEIISALDNESTT 566
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 165 LRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKV 326
+ +EQW KL + W + + +D+EP + L KT S + K +
Sbjct: 504 MTDEQWTKLVDMWSSPEHKKQEKYKDSEPTAIDLFKELHCSKTKGFSEPVKKAI 557
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 540 NRKPDVVQCSISAGDLSFDDTIDQIDE 620
N +PD +C I GDL + +D+ +E
Sbjct: 149 NNRPDETECQIKCGDLFENTVVDEFNE 175
>05_01_0133 +
895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 315 LKKVRRKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDI 494
+KK R LSD +D R Q A+D +NG+I+S + + EI++
Sbjct: 69 IKKRGRASLVDLSDILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEK 128
Query: 495 FKSIDRLASA 524
+ ++A A
Sbjct: 129 LQERSQIALA 138
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 528 STLRNRKPDVVQCSISAGDL-SFDDTIDQ-IDEEKIDQCIEEAFEELS 665
STL +K Q A DL + D +I+Q +DEE+I++ +++A ELS
Sbjct: 324 STLAPKKKAKKQKPKPADDLPTLDPSIEQALDEEEIEEDVDQAAAELS 371
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 159 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV 338
I+ R E K+ + P ++ R E+N + ML+ L L + Q + KV + +
Sbjct: 386 IVSRPEMLSKMYLEACPKLIERFREREENVKSTEPMLAILLLFSPRWLLKQEVPKVVKSI 445
Query: 339 ARQLSDKSI 365
RQL +KSI
Sbjct: 446 NRQLREKSI 454
>11_06_0372 + 22781438-22781977
Length = 179
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 171 NEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLK 287
NE W KL + D D D EED+E +L+A+ L+
Sbjct: 141 NEAWAKLRDGLPLSDSDSDADEEDDED--MALLAAMGLE 177
>01_04_0047 -
15408802-15409068,15409418-15409478,15409516-15409626,
15409707-15409958,15410044-15410270,15410971-15411230,
15411373-15412279,15412370-15412567
Length = 760
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 106 DVNVSTLEW--VQNY*TWKPSCSVTSNG*NSKKTGSRWTWMKT 228
D N+ TL W +Q Y + P V KK G RW K+
Sbjct: 169 DDNIKTLLWNELQKYFVFPPGSQVRGRDYTLKKMGDRWRQWKS 211
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 138 KLLDLETILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPA--MTTMLSALDLKKTTFDSAQ 311
+L+ +ET+ + +KL D+ D +E NEP+ M + +DL+ TF +
Sbjct: 4374 ELISIETLDCEQSEGVKLARDFSKSDWMIIEAKEYNEPSTQMDVEVETVDLEDETFHVGE 4433
Query: 312 L 314
L
Sbjct: 4434 L 4434
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 582 DLSFDDTIDQIDEEKIDQCIEEAFEE 659
D FD +D+ DEE++D+ EE FE+
Sbjct: 129 DADFDPDVDEDDEEEVDE-DEEEFEQ 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,389
Number of Sequences: 37544
Number of extensions: 264108
Number of successful extensions: 895
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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