Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k18
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 348 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 527
           L+DK + +  D I    ++       FF+          E++ +E+D+IF   DR A+  
Sbjct: 333 LTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQ 392

Query: 528 STL 536
            TL
Sbjct: 393 DTL 395


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 168 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 272
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 168 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 272
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 168 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 272
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 168 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 272
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 121 TLEWVQNY*TWKPS 162
           TL W  ++ +WKPS
Sbjct: 96  TLMWTDSHLSWKPS 109


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 339 ARQLSDKSIIDYNDFIRNLQNN 404
           A++L D  + +YN  IR + NN
Sbjct: 21  AKRLYDDLLSNYNRLIRPVSNN 42


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 168 RNEQWMKLEEDWKPVDLDEDR 230
           R E   +++EDWK V +  DR
Sbjct: 495 REEDSTRVKEDWKYVAMVLDR 515


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 198 LLRVSSIARYGAGWFPSLVVLY 133
           LLR+S + RY + W    + LY
Sbjct: 219 LLRLSRLVRYVSQWEEVYIPLY 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,753
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)