Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k16
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   0.76 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   3.1  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    23   7.1  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    22   9.4  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    22   9.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    22   9.4  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 37  VLIPNCKKI*YISLQYILQKK 99
           ++IPNC+K+  +SLQ + +K+
Sbjct: 177 LIIPNCRKLTDVSLQILSEKE 197


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 92   CNMYCKLIYYIFLQF 48
            CN+Y K ++Y  LQF
Sbjct: 1234 CNVYAKALHYTELQF 1248


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 101 FFFCNMYCKLIYYIFLQFGINTSVI 27
           FF C + CK   Y++  F   T+V+
Sbjct: 73  FFSCFIECKNPNYLYQDFDTPTTVV 97


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 60  FFTIWNQHICNKLEIK 13
           FFTI+    CNKL +K
Sbjct: 288 FFTIYELCCCNKLFLK 303


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 89  NMYCKLIYYIFLQFGIN 39
           N YC    ++ LQ G+N
Sbjct: 427 NPYCPTCSFVLLQLGVN 443


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 86  MYCKLIYYIFLQFGIN 39
           M+  +IY +FL FGI+
Sbjct: 555 MFYAIIYSLFLSFGIS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,546
Number of Sequences: 5004
Number of extensions: 3571
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)