Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k16
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)                       25   7.4  
SB_43268| Best HMM Match : TIL (HMM E-Value=6.4)                       25   9.8  

>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
          Length = 603

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 80  CKLIYYIFLQFGINTSVIS 24
           C+   YIFL+FGI  ++IS
Sbjct: 80  CRNSPYIFLEFGIRRTIIS 98


>SB_43268| Best HMM Match : TIL (HMM E-Value=6.4)
          Length = 259

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 34 DVLIPNCKKI*YISLQYIL 90
          DVL+PNC+ +  +S Q +L
Sbjct: 1  DVLVPNCQDVLVVSCQDVL 19


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,518
Number of Sequences: 59808
Number of extensions: 20543
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 16,821,457
effective HSP length: 14
effective length of database: 15,984,145
effective search space used: 303698755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)