Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k16
         (101 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    18   9.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    18   9.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    18   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    18   9.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 87  YVL*TNILYFFTIWNQHICNKLEIK 13
           Y+L   + YF T  N  + N + IK
Sbjct: 310 YILSGCLYYFSTTINPILYNLMSIK 334


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 99  FFLQYVL*TNILYFFTIWNQ 40
           FFL  +    + Y F I+NQ
Sbjct: 169 FFLDLISSIPLDYIFLIFNQ 188


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 99  FFLQYVL*TNILYFFTIWNQ 40
           FFL  +    + Y F I+NQ
Sbjct: 169 FFLDLISSIPLDYIFLIFNQ 188


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 82  TVN*YIIFFYNLESTH 35
           TVN  ++   N+ STH
Sbjct: 447 TVNGDVVSHLNISSTH 462


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 99  FFLQYVL*TNILYFFTIWNQ 40
           FFL  +    + Y F I+NQ
Sbjct: 169 FFLDLISSIPLDYIFLIFNQ 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,361
Number of Sequences: 438
Number of extensions: 242
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)