Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k14
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   280   9e-76
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   278   3e-75
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   276   1e-74
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   3.5  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   6.1  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   8.0  
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397...    28   8.0  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  280 bits (686), Expect = 9e-76
 Identities = 135/217 (62%), Positives = 171/217 (78%)
 Frame = +1

Query: 40  GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 219
           GK K   +  KKG KKK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK
Sbjct: 4   GKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLK 62

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 399
            RVFEVSLADLQ D D  +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTL
Sbjct: 63  HRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL 120

Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 579
           IEA++DVKTTDGY+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +
Sbjct: 121 IEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCD 180

Query: 580 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 690
           L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKI 217


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  278 bits (681), Expect = 3e-75
 Identities = 135/217 (62%), Positives = 170/217 (78%)
 Frame = +1

Query: 40  GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 219
           GK K   +  KKG KKK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK
Sbjct: 4   GKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLK 62

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 399
            RVFEVSLADLQ D D  +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTL
Sbjct: 63  HRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL 120

Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 579
           IEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +
Sbjct: 121 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCD 180

Query: 580 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 690
           L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+
Sbjct: 181 LKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKI 217


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  276 bits (677), Expect = 1e-74
 Identities = 134/217 (61%), Positives = 170/217 (78%)
 Frame = +1

Query: 40  GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 219
           GK K   +  +KG KKK VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK
Sbjct: 4   GKNKRISKG-RKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLK 62

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 399
            RVFEVSLADLQ D D  +++RK RL AE VQGRNVL NF GM  TTDKLR +VKKWQTL
Sbjct: 63  HRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTL 120

Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 579
           IEA++DVKTTD Y+LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  +
Sbjct: 121 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 180

Query: 580 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 690
           L+E+V+K IP+ I K+IEK+   I+PL++V IRKVK+
Sbjct: 181 LKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKI 217


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 586 EVVNKLIPDSIAKDIEKACHGIYPLRD 666
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 329 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 418
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 371 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 228
           +++  +R+ PW L++  R  T +A  +  +KD SA   + +S  E  K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321


>03_05_0791 +
           27736978-27737217,27737648-27739191,27739512-27739763,
           27739844-27739954,27740042-27740102,27740373-27740558
          Length = 797

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 237 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 145
           +FENS LQSF     +L +  K+G   P  E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,037,424
Number of Sequences: 37544
Number of extensions: 438055
Number of successful extensions: 1305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)