Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k14
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   285   3e-77
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           282   1e-76
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.3  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   1.7  
At5g45490.1 68418.m05588 disease resistance protein-related cont...    29   2.9  
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   6.7  
At3g09000.1 68416.m01053 proline-rich family protein                   28   6.7  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.7  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   8.9  
At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  285 bits (698), Expect = 3e-77
 Identities = 137/217 (63%), Positives = 173/217 (79%)
 Frame = +1

Query: 40  GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 219
           GK K   +  +KG KKK VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK
Sbjct: 4   GKNKRISKG-RKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLK 62

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 399
            RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTL
Sbjct: 63  HRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL 120

Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 579
           IEA++DVKTTD Y LR+FCI FT + +   ++TCYAQ +Q+R IR+KM +I+ R+ ++ +
Sbjct: 121 IEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180

Query: 580 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 690
           L+++V K IP++I ++IEKA  GIYPL++V IRKVK+
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKI 217


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  282 bits (692), Expect = 1e-76
 Identities = 137/217 (63%), Positives = 171/217 (78%)
 Frame = +1

Query: 40  GKIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 219
           GK K   +  +KG KKK VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK
Sbjct: 4   GKNKRISKG-RKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLK 62

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 399
            RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTL
Sbjct: 63  HRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120

Query: 400 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 579
           IEA++DVKTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM EI+ ++ ++ +
Sbjct: 121 IEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCD 180

Query: 580 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 690
           L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKI 217


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -1

Query: 555 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 391
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 669 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 502
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S + +
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEINL 480


>At5g45490.1 68418.m05588 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 354

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 106 TRKDWYDVK--APSMFSKRQVGTTLVNRTQG-TKIASEGLKGRVFEV-SLADLQADTDAE 273
           T KDW DV   A     K++       R +  +K+    + G   E+ SL     D    
Sbjct: 22  TCKDWLDVNGLAKGNLEKKRDDNEEEERLKTESKLPGHDIHGFDNEIKSLQHFLLDQKVR 81

Query: 274 RSFRKFRLIAEYVQGRNVLC 333
           R F+   ++ EY  G+  LC
Sbjct: 82  REFKSLVIVGEYGVGKTALC 101


>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +1

Query: 43  KIKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTL-VNRTQGTKIASEGLK 219
           K+K  +  + K  KK+  +  TR    D+K  S F K      + +   +  KI  E   
Sbjct: 100 KVKEKKGKMNKTKKKRKAEEITRSSVEDLKRESKFKKSNKKKKMDMTSKKENKIEEE--- 156

Query: 220 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGR 321
             V+++S      D D  R  +K+  +++Y +GR
Sbjct: 157 EDVYQIS----SGDEDCTRGMKKW--VSDYYEGR 184


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 28/109 (25%), Positives = 55/109 (50%)
 Frame = +2

Query: 329 SATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANARRATP 508
           S++S A   +P SSG    + R +S+P    R+       +++   P+ T  +N+R +TP
Sbjct: 137 SSSSVAGLRRPSSSG----SSRSTSRPATPTRRSTTP---TTSTSRPVTTRASNSRSSTP 189

Query: 509 STLRSEQSERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTSRRPAMAST 655
           ++  +  + R    +    + T +SG   ++   TP  R++ RP+ AS+
Sbjct: 190 TSRATLTAARATTSTAAPRTTTTSSG---SARSATP-TRSNPRPSSASS 234


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 225  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 79
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 392 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 240
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


>At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 763

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 46  IKACRRAVKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVN 180
           + A +   +KG  ++ V+ F R D+YD + P++FS   + + LV+
Sbjct: 80  VGAMKNYGRKGKVQEAVNVFERMDFYDCE-PTVFSYNAIMSVLVD 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,378
Number of Sequences: 28952
Number of extensions: 343350
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)