Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k12
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0309 + 17563853-17564134                                         28   7.9  
02_01_0250 + 1650815-1651072                                           28   7.9  

>02_03_0309 + 17563853-17564134
          Length = 93

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 433 WVVASSSVILFAPVIFEVERAQVAEMEKSQQKQVLLG 543
           W+  ++ ++L  P+I E++R Q    +   Q+Q LLG
Sbjct: 49  WIAGTTFLVLVVPLIIEMDREQQLN-DLELQQQALLG 84


>02_01_0250 + 1650815-1651072
          Length = 85

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 433 WVVASSSVILFAPVIFEVERAQVAEMEKSQQKQVLLG 543
           W+  ++ ++L  P+I E++R Q    +   Q+Q LLG
Sbjct: 45  WIAGTTFLVLVVPLIIEMDREQQLN-DLELQQQALLG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,506
Number of Sequences: 37544
Number of extensions: 320234
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)