Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k12
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)                     81   6e-16
SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)                   29   2.7  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               29   3.5  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   4.6  
SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021)                     28   8.1  

>SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)
          Length = 109

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/85 (44%), Positives = 54/85 (63%)
 Frame = +1

Query: 289 DEPDETLSERLWGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMWVVASSSVILFA 468
           D+  ET+ ER+  L+EMFP+ VRN        T SG K LY  +   +W++++S +IL  
Sbjct: 3   DDISETIGERIMALSEMFPDSVRNVASATGGYTVSGAKWLYNFTGKTIWILSTSFMILAL 62

Query: 469 PVIFEVERAQVAEMEKSQQKQVLLG 543
           PV+FEVER Q  E +  QQ+Q+LLG
Sbjct: 63  PVVFEVERVQTEEAQLQQQRQILLG 87


>SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -1

Query: 395 PDHVFVVTVYVPFLTHSGNISVRPHN 318
           P H  ++ +++PF++ S +++ RPH+
Sbjct: 40  PHHFVIIIIFIPFISSSSSLTYRPHH 65


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 566 PCLRCHQCHDKLRLSHRISNHLHIDLSHVKHNNVVQ 673
           PC RC+   D +    R+   LH D  H+  +  +Q
Sbjct: 520 PCQRCYPSRDSIYSDERVLQMLHDDAGHLGSSKTLQ 555


>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
          Length = 451

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 367 YTVTTNTWS--GIKGLYGLSRSVMWVVASSSVILFAPVIFE 483
           Y+   N W    ++ L+G S S++WVV SS   + AP+  E
Sbjct: 293 YSYLINPWYVLPVQILHGFSFSLVWVVCSSYAAVMAPIGME 333


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 416 RPYRPLIPDHVFVVTVYVPFLTHSGNISVRPH 321
           RP+RP+ P  +   T   P  +H G IS+RPH
Sbjct: 21  RPHRPIAPSPLGPTTPSPP--SHHGPISLRPH 50


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 542  PNNTCFCCDFSISAT*ALSTSNMTGANNITD---ELATTHITERDRPYRPLIPD 390
            P NT F C F  SA    S+ ++T    + D   +  TTH+T    P +P  PD
Sbjct: 1499 PGNT-FVCMFYDSARNVWSSDHVTTQYTVGDTEVKCLTTHLTTFGAPSKPSTPD 1551


>SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 375 YNKYMVWYQRPVWSITLSNVGCCQFIGNIVCSCHI 479
           YN++     R + +IT   VGC  +  +++CS ++
Sbjct: 56  YNEHYSMASRAIDAITKQLVGCSTYANDLICSVYL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,555
Number of Sequences: 59808
Number of extensions: 406167
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)