Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k12
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.6  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 58  YDNLFTKKNRFSN*IHIVYNMLMDLTDELELSDSGMESLTT 180
           Y N    KN+  + I  VY + +D  D L + D+G+   T+
Sbjct: 108 YPNWSWAKNQNCSGITSVYRIAIDEWDRLWVLDNGISGETS 148


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 278 KSTTMNQMKLFLKDCGV*PK 337
           K+   NQM ++  DC + PK
Sbjct: 13  KNLNQNQMMIWALDCSIKPK 32


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 301 HLVHRRTLSKVH*EIQQWAMTPPRGL*NIVQ 209
           HLV    +  +   IQQW    P  L  +++
Sbjct: 470 HLVWNSWMPSIRGAIQQWTCRQPEPLIELIE 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,580
Number of Sequences: 438
Number of extensions: 3937
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)