Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k12
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72810.1 68414.m08417 threonine synthase, putative strong sim...    33   0.13 
At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family pr...    32   0.41 
At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family pr...    32   0.41 
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At5g43970.1 68418.m05380 expressed protein                             28   5.0  
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.0  
At1g77405.1 68414.m09014 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    27   8.8  
At3g29330.1 68416.m03683 expressed protein                             27   8.8  
At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesteras...    27   8.8  

>At1g72810.1 68414.m08417 threonine synthase, putative strong
           similarity to SP|Q9S7B5 Threonine synthase, chloroplast
           precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana}
          Length = 516

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 280 LSKVH*EIQQWAMTPPRGL*NIVQAFFQGYHLCS*SKTPFRY-RLILIHRSNP*ACYRQY 104
           L + + ++  W + P   L NI  AF++G+H+C       R  RL+    +N    Y  Y
Sbjct: 310 LQQFNWQVPDWVIVPGGNLGNIY-AFYKGFHMCKELGLVDRIPRLVCAQAANANPLYLHY 368

Query: 103 GFNLKNDF 80
               K DF
Sbjct: 369 KSGFKEDF 376


>At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 155 IAEWSL*LRAKMIPLKEGLNNIS*PPRWGHRPLLDLLV 268
           I  W + LR+K+  L   L+++S  P W   PLL  L+
Sbjct: 45  IGRWQI-LRSKLFTLNSSLSSLSESPHWSQNPLLHTLL 81


>At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 155 IAEWSL*LRAKMIPLKEGLNNIS*PPRWGHRPLLDLLV 268
           I  W + LR+K+  L   L+++S  P W   PLL  L+
Sbjct: 45  IGRWQI-LRSKLFTLNSSLSSLSESPHWSQNPLLHTLL 81


>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 301 ETLSERLWGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMWV---VASSSVILFAP 471
           + ++ER+  L E+ P C R    ++       +K L  +   VMW+   +A+++    +P
Sbjct: 270 DRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQ-MQLQVMWMGSGMAAAAAAAASP 328

Query: 472 VIFEVERAQVAEMEKSQQKQVLL 540
           ++F   ++     + + Q Q+ L
Sbjct: 329 MMFPGVQSSPYINQMAMQSQMQL 351


>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 442

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 301 ETLSERLWGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMWV---VASSSVILFAP 471
           + ++ER+  L E+ P C R    ++       +K L  +   VMW+   +A+++    +P
Sbjct: 270 DRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQ-MQLQVMWMGSGMAAAAAAAASP 328

Query: 472 VIFEVERAQVAEMEKSQQKQVLL 540
           ++F   ++     + + Q Q+ L
Sbjct: 329 MMFPGVQSSPYINQMAMQSQMQL 351


>At5g43970.1 68418.m05380 expressed protein
          Length = 99

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 433 WVVASSSVILFAPVIFEVER-AQVAEMEKSQ 522
           W+  ++ +IL  P+I E++R AQ+ E+E  Q
Sbjct: 54  WIAGTTFLILVVPLIIEMDREAQINEIELQQ 84


>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 384 ICCNCVCAIPYTLWEHFGQTPQSFRKSFIWFI 289
           +C   +C +P +  +  G   +  R+SFIW I
Sbjct: 293 VCLGSICNLPLSQLKELGLGLEESRRSFIWVI 324


>At1g77405.1 68414.m09014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 410

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +1

Query: 301 ETLSERLWGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMWVVASSSVILFAPVIF 480
           + +  R+W    MF E +  G Y+VT      I+ +  + +    V  SS+       + 
Sbjct: 258 KAIRRRMWEANRMFREMLFRGYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALV 317

Query: 481 EVERAQVA 504
           E  RA  A
Sbjct: 318 ETRRAAEA 325


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 554 LWQDPCLRCHQCHDKLRLSHRISNHL 631
           LW   C  C  CH  + + H I NH+
Sbjct: 305 LWHPGCFCCRACHKPIAI-HDIENHV 329


>At3g29330.1 68416.m03683 expressed protein
          Length = 232

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +3

Query: 462 VCSCHI*GRKXXXXRNGKVTTKTGVIRDKHSYGRTHACDATNATINYV 605
           V  C +        R   V   + ++ + H  G+ HA  A  A +NY+
Sbjct: 183 VVECGVSNESIRLCRICNVVCNSDIVYNDHLAGQKHAAKAAKALVNYI 230


>At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesterase /
           acyl-ACP thioesterase / oleoyl-[acyl-carrier protein]
           hydrolase / S-acyl fatty acid synthase thioesterase
           identical to acyl-(acyl carrier protein) thioesterase
           [Arabidopsis thaliana] GI:804948
          Length = 412

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 348 LWEHFGQTPQSFRKSFIWFI 289
           L + FG TP+ F+K+ IW +
Sbjct: 179 LGDGFGSTPEMFKKNLIWVV 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,802
Number of Sequences: 28952
Number of extensions: 276718
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)