Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k09
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             189   2e-48
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   2e-41
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              162   2e-40
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   1e-38
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   9e-18
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         85   7e-17
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         81   6e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         78   6e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          75   5e-14
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         56   3e-08
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.070
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.49 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  189 bits (460), Expect = 2e-48
 Identities = 91/157 (57%), Positives = 106/157 (67%)
 Frame = +1

Query: 184 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 363
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 364 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 543
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 544 KDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 654
           K+TNGSQF+ITT+KT WLDG H  FGKVLEGMDVV++
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRR 163


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  165 bits (402), Expect = 2e-41
 Identities = 92/172 (53%), Positives = 111/172 (64%), Gaps = 18/172 (10%)
 Frame = +1

Query: 184 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 324
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 325 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 489
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 490 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 645
           NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  162 bits (394), Expect = 2e-40
 Identities = 79/141 (56%), Positives = 95/141 (67%)
 Frame = +1

Query: 232 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 411
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 412 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 591
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 592 WLDGRHVVFGKVLEGMDVVQK 654
           WLDG+HVVFG V+EG DVV+K
Sbjct: 254 WLDGKHVVFGNVIEGFDVVRK 274


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  156 bits (379), Expect = 1e-38
 Identities = 80/142 (56%), Positives = 91/142 (64%)
 Frame = +1

Query: 229 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 408
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 409 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 588
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 589 PWLDGRHVVFGKVLEGMDVVQK 654
            WLDG+HVVFG V +GMDVV+K
Sbjct: 119 SWLDGKHVVFGSVKDGMDVVKK 140


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +1

Query: 529 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 654
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRK 42


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
 Frame = +1

Query: 460 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEG 636
           SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H VFG+V++G
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKG 67

Query: 637 MDVVQK 654
           MDV Q+
Sbjct: 68  MDVAQQ 73


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +1

Query: 502 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 654
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV++
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRE 238


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 32/63 (50%), Positives = 46/63 (73%)
 Frame = +1

Query: 460 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 639
           S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+V+EG+
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGL 110

Query: 640 DVV 648
           +V+
Sbjct: 111 NVL 113


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = +1

Query: 523 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQK 654
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKK 46


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = +1

Query: 460 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 639
           SIYG  F DE F+ KH     LSMAN G +TNGSQFFI           HVVFG V++G 
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGE 80

Query: 640 DVVQK 654
           ++V++
Sbjct: 81  ELVRQ 85


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
 Frame = +1

Query: 277 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 456
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 457 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGR-----HVVF 618
                +   D      H   G L+MA    +D+  SQFFI      +LD       + VF
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVF 144

Query: 619 GKVLEGMDVVQK 654
           GKV++GMDVV K
Sbjct: 145 GKVVKGMDVVDK 156


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +1

Query: 472 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 630
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 277 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 405
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 283 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 396
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 239 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 138
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,857,063
Number of Sequences: 59808
Number of extensions: 387846
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)