Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k07
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 314 4e-86
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 258 4e-69
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 28 6.0
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85) 28 7.9
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 314 bits (771), Expect = 4e-86
Identities = 141/212 (66%), Positives = 167/212 (78%), Gaps = 1/212 (0%)
Frame = +2
Query: 35 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 214
SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1 SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60
Query: 215 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 394
+PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 61 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120
Query: 395 WYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 574
W W D+ G+KSIE+DF M +YC V+RVI HTQ KLLK RQKKAHIM
Sbjct: 121 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIM 180
Query: 575 EIQLNGG-TIEDKVKWAREHLEKPIPVDSVFA 667
EIQ+NGG + +KV W RE LE P PV VF+
Sbjct: 181 EIQVNGGKDVAEKVDWCRERLENPAPVRKVFS 212
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 258 bits (631), Expect = 4e-69
Identities = 113/171 (66%), Positives = 135/171 (78%)
Frame = +2
Query: 20 LSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 199
L MSHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH+
Sbjct: 44 LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103
Query: 200 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 379
+RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R
Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163
Query: 380 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 532
RFYKNW W D+ G+KSIE+DF M +YC V+RVI HTQ
Sbjct: 164 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 523 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 648
PH N + T G H NPT HR S GQ R +G P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324
>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 41 RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 157
R+F P+ G +G Y ++ R H GK + PK +P + +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184
>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 98 RRHRGKVKAFPKDDPSKPVHL 160
R HR + AFP D P+ PV L
Sbjct: 7 RAHRSSLHAFPPDGPAHPVSL 27
>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 388
TP +C+G GY+ T L+ L LTV M E + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340
>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
Length = 105
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 545 KQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 640
KQ+ K + E++ N +EDKV+W + EK
Sbjct: 53 KQKLAKNLLREMERNETDVEDKVEWTKAITEK 84
>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 98 RRHRGKVKAFPKDDPSKPVHL 160
R HR + AFP D P+ PV L
Sbjct: 15 RAHRSSLHAFPPDGPAHPVSL 35
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,537,041
Number of Sequences: 59808
Number of extensions: 484641
Number of successful extensions: 1183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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