Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k06
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    47   1e-05
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    29   2.4  
02_03_0240 - 16739628-16740369,16740392-16740978                       28   5.4  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/53 (45%), Positives = 30/53 (56%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQ 464
           PQI KIL+  S  G+++    LE+   T   AY    G PFSA+GE  FL IQ
Sbjct: 76  PQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGELAFLLIQ 128


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 485 STPLWWRSNEGRNISVCLLCNSLSFSKWLY 574
           S  LWW +      S CL  N  SF  WLY
Sbjct: 590 SRQLWWIALRAIGHSECLPLNEQSFHSWLY 619


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 438 GEGTFLAIQTAMIAALVLHYGGAPMKGGI 524
           GE TF      + AAL  H+GG  M  G+
Sbjct: 264 GESTFQEASAVISAALARHFGGDDMPSGV 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,868
Number of Sequences: 37544
Number of extensions: 348276
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)