Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k06
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical pr... 77 8e-15
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 31 0.92
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 0.92
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 0.92
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 31 0.92
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 0.92
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 29 2.1
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z78018-5|CAB01446.1| 398|Caenorhabditis elegans Hypothetical pr... 27 8.6
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 27 8.6
>U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical
protein F38E1.9 protein.
Length = 238
Score = 77.4 bits (182), Expect = 8e-15
Identities = 45/163 (27%), Positives = 72/163 (44%)
Frame = +3
Query: 144 MAEILKGLLLGVLSQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKI 323
M +I++ L G C+ E + +NF C K+ PQI KI
Sbjct: 1 MNDIIQSLFPG----NCFEELLINFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKI 56
Query: 324 LQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGG 503
++SA+GI+ L L +YSY GF FS WG+ F+A+Q +I + + G
Sbjct: 57 QAARSAQGISAASQLLALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSG 116
Query: 504 APMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIA 632
M FL + A+ +VS L +Q +PI++++
Sbjct: 117 QTMLSVGFLGIVSAVAYGVVSKSIPMQTLTAVQTAGIPIVVVS 159
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 435 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 596
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 435 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 596
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 435 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 596
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 435 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 596
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 731 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 785
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 435 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 596
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 443 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 538
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 496 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 527
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 443 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 538
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 659 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 690
>Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical
protein C50B8.3 protein.
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 477 LSLPFGWLKMFLHPMH*MGNPLHSYK 400
LS+ F W F HP+H G P Y+
Sbjct: 239 LSMDFTWGDSFSHPLHTHGGPYWQYE 264
>Z78018-5|CAB01446.1| 398|Caenorhabditis elegans Hypothetical
protein W07G4.5a protein.
Length = 398
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 352 LIPSALLLCKILKI-CGTFTSMDPRMMPIPRPLLSVDLKHGTSRKL 218
LI S L+LC +LKI G+ T + MP+P+ V L S KL
Sbjct: 27 LILSPLILCALLKIDFGSPTGVSHLTMPVPQSEQLVKLLEVQSVKL 72
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 509 NEGRNISVCLLCNSLSFSKWLYLH*YIMDHAGCHCSYHSHS 631
+E NI +C+L L F+ +LY+H I + H Y+ +S
Sbjct: 186 HEVNNIRICVLIVLLFFAIFLYIHNKIREKRMVHNVYNINS 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,267
Number of Sequences: 27780
Number of extensions: 331527
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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