Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k06
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07390.1 68417.m01134 PQ-loop repeat family protein / transme...    68   5e-12
At5g59470.1 68418.m07453 PQ-loop repeat family protein / transme...    54   6e-08
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9...    27   7.9  

>At4g07390.1 68417.m01134 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q60441
           Mannose-P-dolichol utilization defect 1 protein
           (Suppressor of Lec15 and Lec35 glycosylation mutation)
           {Cricetulus griseus}, Lec35 protein [Cricetulus griseus]
           GI:9858721; contains Pfam profile PF04193: PQ loop
           repeat
          Length = 235

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 485
           PQI KI+Q KS  G+++    LE+   T + AY    G PFSA+GE  FL IQ  ++ A 
Sbjct: 48  PQIMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVAC 107

Query: 486 VLHYG-GAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIA 632
           + +Y    P+   I   +YCA+   +++G  +  +   + A    I L A
Sbjct: 108 IYYYSQPVPVTTWIRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFA 157


>At5g59470.1 68418.m07453 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q60441
           Mannose-P-dolichol utilization defect 1 protein
           (Suppressor of Lec15 and Lec35 glycosylation mutation)
           (SL15) {Cricetulus griseus}; contains Pfam profile
           PF04193: PQ loop repeat
          Length = 239

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 485
           PQI KI+ +KS +G+++    LE+   T + AY      PFSA+GE  FL IQ A+I   
Sbjct: 48  PQIMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQ-ALILVA 106

Query: 486 VLHYGGAPMKGGIFLS--VYCAIVSVLVSG 569
            ++Y   P+    ++   +Y AI   + +G
Sbjct: 107 CIYYFSQPLSVTTWVKAILYFAIAPTVFAG 136


>At5g06680.1 68418.m00754 tubulin family protein similar to
           SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
           sapiens}
          Length = 838

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 313 FSKFYKVRVPKESIFMEFIWSCLLSLRTLLIAM*WVSHSVHGV 441
           FS  Y+ RVP +++F E + S  L +   L  +  V H++ G+
Sbjct: 580 FSLEYEARVPLDTVFTESVLSKYLRVFNFLWKLKRVEHALIGI 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,324
Number of Sequences: 28952
Number of extensions: 295833
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)