Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k04
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    28   1.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.6  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   2.1  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    27   2.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.8  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.6  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   8.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   8.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   8.7  

>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 328 WKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEI 459
           WK + NDP+L+G ++I      +R  RR  L       GI  E+
Sbjct: 118 WKGLINDPDLDGSYNINK---GIRVARRIFLELLETGVGIASEM 158


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 30/119 (25%), Positives = 51/119 (42%)
 Frame = +1

Query: 316 KSEVWKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQN 495
           + EV KKI    +L  K ++ S    V E +     +A  Q    FE++ L Q+   L+N
Sbjct: 147 EKEVEKKITIIKDL--KDALASSTHQVLELQHTQQEKASLQTNYEFELQKLTQKNSILEN 204

Query: 496 DDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSFNN 672
           +++    E+  V +K     +   L      S +S     K   +R  S LS + + +N
Sbjct: 205 NNTWLSRELQGVNDKLLSLHQEASLEKSQLSSQLSDAVLEKDALQRKVSSLSQQFTESN 263


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 419 KIPLLSSLTFVLTLPIDHLPSSSGSFAIFF 330
           K  L  SL+ VL LP+DH+  SS S   +F
Sbjct: 45  KKTLRESLSCVLALPLDHVTGSSESMENWF 74


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 391 NVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDD 501
           NVR+D   I++EA  + G TFEI  ++  + A++N D
Sbjct: 197 NVRDDILSIVNEAANENGSTFEI--VNDPKVAVKNAD 231


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = +2

Query: 365 NGLLVA----LERMLEKIEEEF*VKPEDSVVSLSK*RAWIKSRTRCRMTTVISSRKSFTS 532
           NGL +A    ++   E I +EF VKPE  V       + I       +TTV+S  +S+  
Sbjct: 280 NGLEIARVTIVDMKSEVIYDEF-VKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLK 338

Query: 533 RKNETNPRSTVICPRKLRNH-*CLRKTRP 616
           +  + N   TV+    L +   CL+ T P
Sbjct: 339 KTVDNN---TVLLGHSLNSDLNCLKFTHP 364


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
 Frame = +1

Query: 400 EDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPK-HGYLSA 576
           ++   I  E   +  I    E  D+E +  + ++  +  E I  +E+R K  K     +A
Sbjct: 43  DEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKILRDEERIKKRKIQKNRAA 102

Query: 577 KTPKSLM--------SAENTPKKKYKRNNSDLSDERS 663
              ++L         +A   PKKKYK+   D S  R+
Sbjct: 103 NLQRTLQPPKRPTPSAASEVPKKKYKKIKVDPSARRT 139


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/91 (23%), Positives = 35/91 (38%)
 Frame = +1

Query: 421 SEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMS 600
           SE   +       + ++QE  +   DD    T+    E  R  +   G  SA + K    
Sbjct: 161 SELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKKKKKR 220

Query: 601 AENTPKKKYKRNNSDLSDERSFNNCNSATPD 693
                KKK  + N + + E    + + +TPD
Sbjct: 221 NRKNQKKKSTKQNIEATTENDALSESISTPD 251


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 511 FTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSFNNC 675
           F  ++    + NKS + G+ + +  ++     +T K+    NNS   DE S   C
Sbjct: 162 FYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPASTAKRASAVNNSKTEDEVSTKCC 216


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 475 EQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSD 654
           E+ + + D+ N   E    + KR K+P            +  +E+  K+  +    ++SD
Sbjct: 464 EEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVSD 523

Query: 655 E 657
           E
Sbjct: 524 E 524


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 328 WKKIANDPELEGKWSI 375
           WK + NDP L+G ++I
Sbjct: 116 WKGLVNDPNLDGSFAI 131


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +1

Query: 427 ARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHG------YLSAKTPK 588
           AR Q G   + E  D++ DAL  D  +Q  E   VEE+ +  P          L    PK
Sbjct: 112 ARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETDPK 171

Query: 589 SLMSAENTPKKKYKRNNSDLSDERSFN 669
             ++     ++K K   + + +E++ N
Sbjct: 172 YGLTESEVEERKKKYGLNQMKEEKTNN 198


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 445 ITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRN--KSPKHGYLSAKTPKSLMSAENTPK 618
           +  E + L +E   LQ++ ++   E+   EE R+   S K  ++  +    ++  EN   
Sbjct: 366 VQIECKRLRKENLFLQSERTHLLREL---EELRHLATSAKEDFVKVEKLNKIIKDENENL 422

Query: 619 KKYKRNNS 642
           K+Y RNNS
Sbjct: 423 KEYIRNNS 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,189
Number of Sequences: 5004
Number of extensions: 54728
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)