Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k04
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 36 0.034
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 31 1.3
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 30 1.7
07_01_0535 + 3952066-3952986 29 3.9
11_06_0375 - 22894125-22894667 28 6.9
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 28 9.1
09_02_0462 + 9583558-9584910 28 9.1
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 35.9 bits (79), Expect = 0.034
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +1
Query: 454 EIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKR 633
+ E +D+E D + + + + ++ +K S Y S + S+ EN + +
Sbjct: 101 DYEDIDEEYDGPEVEAATEEDHLL--SKKDYFSSNAVYASVNSKVSVFDEENYDEDEEPP 158
Query: 634 NNSDLSDERSFNNCNSATPDQLD 702
N++DL + NC SA+ +QLD
Sbjct: 159 NDNDLPSDNIVQNCTSASAEQLD 181
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +1
Query: 394 VREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLS 573
+ E+ + SE R G E++ + QE DAL+N+ + E+ VEEK + + ++
Sbjct: 679 ILEEDKADRSEMMRLSG---ELQRMVQETDALKNEKDSLQKELERVEEKSSLLREKLSMA 735
Query: 574 AKTPKSLMSAENTPKKKYKRNNSDL 648
K K L+ K+ SD+
Sbjct: 736 VKKGKGLVQEREGLKQVLDEKKSDI 760
>01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +1
Query: 487 LQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSF 666
LQ+DD+N TE + + ++ G S K L +A TP +S +
Sbjct: 1036 LQDDDNNGSTETSNIFSQLSEDVNIGVPSDKQQDQLYAASATPTTSGTEPSSSRHGQGKE 1095
Query: 667 NNCNSATPDQLDSFLLYIKSL 729
++C PDQ D +KSL
Sbjct: 1096 DHC----PDQADEECNILKSL 1112
>07_01_0535 + 3952066-3952986
Length = 306
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 469 DQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTP 615
+QE+ Q+ D + T Y++E + + Y K P ENTP
Sbjct: 99 EQEKKPFQDQDGERKTPKQYLDEDQKTVQQCQYEDKKVPNQCKDEENTP 147
>11_06_0375 - 22894125-22894667
Length = 180
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Frame = +1
Query: 313 WKSEVWKKI-ANDPELEGKWS 372
W++ VW+KI A+DP +EG+++
Sbjct: 116 WRAHVWEKIFADDPPVEGEFT 136
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 454 EIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKS--LMSAENTPKKKY 627
E+E L + + + + N+ +++ V+EK N L+ + K+ L + K KY
Sbjct: 95 EVERL--KTNLTEEKNKNECLKIMLVDEKDNNECLKTNLAEEKDKNGLLKTMLAEEKDKY 152
Query: 628 KRNNSDLSDERSFNNC 675
+R + L+DE N C
Sbjct: 153 ERLKTMLADEEDKNKC 168
>09_02_0462 + 9583558-9584910
Length = 450
Score = 27.9 bits (59), Expect = 9.1
Identities = 29/117 (24%), Positives = 47/117 (40%)
Frame = +1
Query: 292 ADDEFPQWKSEVWKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLD 471
AD+E + K E KK A+ K G + D S R G + +
Sbjct: 174 ADEEMKKLKKEAKKKGASKESTSSKSGAGKKKAAAGSDEDHSNSPTRSHDG-----DNVA 228
Query: 472 QEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNS 642
++D +DD Q+ +E + + + LSA T + +M + P+KK K S
Sbjct: 229 ADED---DDDDVQWQTDTSLEAAKQRMQEQ--LSAATAEMVMLSTEEPEKKKKHEAS 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,311
Number of Sequences: 37544
Number of extensions: 318820
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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