Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k04
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          31   0.75 
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)                      28   9.2  
SB_20933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         28   9.2  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_32940| Best HMM Match : EGF (HMM E-Value=0)                         28   9.2  

>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 397  REDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQ-FTEVIYVEEKRNKSPKHGYLS 573
            ++++  +L E      I  E     Q Q  + ND   +  +  +Y  +  +K+ K     
Sbjct: 951  QKNKNALLKELSLAKKIELESYEHLQGQSEVGNDSEKENSSRTVYTSDGDHKADKEDQPR 1010

Query: 574  AKTPKSLMSAENTPKKKYKRNNSDL 648
            ++TP SL S+ + P +  K+ N DL
Sbjct: 1011 SETPSSLHSSVSDPAEALKQENGDL 1035


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +1

Query: 394  VREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYV-----EEKRNKSPK 558
            + +D R  + E        F+  G D E++   NDD+ Q  EV  +     EE+  + P+
Sbjct: 1751 IDDDTRKEVQEIDDDTKKEFQEIGNDMEKEVQVNDDA-QKKEVQEIANSDSEEEVERFPR 1809

Query: 559  HGYLSAKTPKSLMSAENTPK--KKYKRNNSDLSDERSFNNCNSATPDQ 696
            H Y+S     +  S+EN+P   K + +   +  DE    + + A  D+
Sbjct: 1810 HTYVSEDLDSNESSSENSPADGKGFVQATEEGGDEEEAYSDDGAVCDE 1857


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/117 (19%), Positives = 55/117 (47%)
 Frame = +1

Query: 331 KKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQ 510
           KK+  D + + K S  S+ ++  +DR     + +++     + +  D  + ++ ++D  +
Sbjct: 201 KKVKKDKKQKAKDSSESL-SDSEDDRERRKKKVKKE----IKHKAKDSSESSIDSEDDRE 255

Query: 511 FTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSFNNCNS 681
             E    ++K  K  KH      + +S  S+++  K K K+N  D  +++  +  +S
Sbjct: 256 RKER---KKKNKKEKKHKSKETSSSESNKSSDSEEKAKSKKNKKDKKNDKDSSKKSS 309


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 596  CLRKTRPKRNINAITVTCRMKGLLITATVQPRISSIRFYCTLKVF 730
            C+R+  P   +  + ++  +  LL+  T+QP +  +R Y   K++
Sbjct: 867  CIREVHPLSYVYLVVISTLLGLLLLMITIQPYVLRLRHYIASKLY 911


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 469 DQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENT----PKKKYKRN 636
           +Q+   + N   +   + I   +   KSPK     AK+P    S+ +T    P K  K +
Sbjct: 178 EQKNSLISNQKKSPLNQTI---DHLKKSPKRSSHEAKSPTKSTSSHDTKSKSPCKATKES 234

Query: 637 NSDLSDERSFNNCNSATPD 693
           +S +   +  N  +S T D
Sbjct: 235 SSKVMSSKEINKESSGTQD 253


>SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 202 LHSSRSRQKIRTQDVLPCLSTRYNSIIF 119
           LH S +RQK+ T  ++  +  R+N+I+F
Sbjct: 208 LHQSCARQKLDTDSIVEHMMCRFNTILF 235


>SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)
          Length = 219

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 400 EDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNK 549
           E+R+ I  E R Q     E   +D+E+D L+ ++  + T+   + +KR +
Sbjct: 42  EERKAIFKEQREQLE---ESSRIDKEKDRLRLEEEQELTKQEEIRQKRRR 88


>SB_20933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 493 NDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRNN 639
           ND     +E  Y E+  N +P +  +    P+S+   + TP    K NN
Sbjct: 172 NDGPQSNSEDAYGEDSANMNPLYEEMPQHKPRSISFTKQTPALYAKLNN 220


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 493 NDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKRN-NSDLSDERSFN 669
           N    Q  E I+V+     +P    ++ K  ++L +    PK+KYKR+   ++ +++ F 
Sbjct: 40  NKSIAQGVEEIFVDPSDIWTPDIALMNKKRKRALGTKLVIPKQKYKRSLKFEMDEQQKFM 99

Query: 670 NCNSA 684
           +  SA
Sbjct: 100 SIKSA 104


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = +1

Query: 460 EGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKY---- 627
           E + QE +   +DD N+  +    EE+     +      K PK  +S ENT  ++     
Sbjct: 355 ENVAQESEESLDDDDNKENDGEEKEEEEATEERRKRKGEKLPKVYVSFENTEGEEQDLNE 414

Query: 628 --KRNNSDLSDERSFNNCNSATPDQLDS 705
             K+   D+ ++        AT  Q+DS
Sbjct: 415 DAKQGLDDILEDDKGKEGRDATEPQVDS 442


>SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 400 EDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNK 549
           E+R+ I  E R Q     E   +D+E+D L+ ++  + T+   + +KR +
Sbjct: 62  EERKAIFKEQREQLE---ESSRIDKEKDRLRLEEEQELTKQEEIRQKRRR 108


>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1025

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 320 QKSGKKLQTIPSWRVNGLLVALERMLEKIEEEF*VKPED 436
           +K   K + +PSW++  L+   E+ L +++ E  VK E+
Sbjct: 875 EKEQNKYKGVPSWKIPVLIQKEEQRLRQLQAEEEVKKEE 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,771
Number of Sequences: 59808
Number of extensions: 395793
Number of successful extensions: 1290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)