Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k04
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    30   1.4  
At5g25580.1 68418.m03044 expressed protein                             29   2.5  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    29   3.3  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    29   3.3  
At3g19370.1 68416.m02457 expressed protein                             29   4.3  
At5g56850.2 68418.m07093 expressed protein                             28   7.6  
At5g56850.1 68418.m07094 expressed protein                             28   7.6  
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...    28   7.6  
At1g66245.1 68414.m07520 hypothetical protein                          27   10.0 

>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = +1

Query: 391 NVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYL 570
           NV ED+      +    G     E  + E+D ++  D N+  E   VEEK  ++ K   +
Sbjct: 210 NVEEDKSDGDDSSDEDWGKNVGKEVCESEEDDVELVDENEMDEEELVEEKDEETSKVNRV 269

Query: 571 SAKTPKSLMSAENTPKKKYKRNNSD 645
           S    +   ++E T     K++ +D
Sbjct: 270 SKTDSRKRKTSEVTKSGGEKKSKTD 294


>At5g25580.1 68418.m03044 expressed protein 
          Length = 405

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +1

Query: 454 EIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKKYKR 633
           E+EG DQ+  +L ++D +   E   +    +K  +     A+ PK    A+N  +++  R
Sbjct: 342 EVEGRDQQSASLDSNDKSTEVEAAEIHNDDDKENEISKEDAE-PKEEFGAKNRLRQRVTR 400

Query: 634 NNS 642
           N++
Sbjct: 401 NSA 403


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +1

Query: 454 EIEGLDQEQD---ALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKS-LMSAENTPKK 621
           E E   QEQ    AL  + + Q T V   EEKRN     G+L      S LMS   T  K
Sbjct: 432 EEEQQQQEQRYPMALDLNFTAQLTPVDDQEEKRNT----GFLGIGLDASKLMSRGRTGFK 487

Query: 622 KYKRNNSDLSDERSFNN 672
            YKR + +  + R  NN
Sbjct: 488 PYKRCSMEAKESRILNN 504


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +1

Query: 454 EIEGLDQEQD---ALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKS-LMSAENTPKK 621
           E E   QEQ    AL  + + Q T V   EEKRN     G+L      S LMS   T  K
Sbjct: 514 EEEQQQQEQRYPMALDLNFTAQLTPVDDQEEKRNT----GFLGIGLDASKLMSRGRTGFK 569

Query: 622 KYKRNNSDLSDERSFNN 672
            YKR + +  + R  NN
Sbjct: 570 PYKRCSMEAKESRILNN 586


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 454 EIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKK 624
           E+ G D E   L   D+N+F  +  +++++ +S     +  KT    ++AENT  KK
Sbjct: 111 ELLGRDHEATRL---DNNKFRSIESMKKRQEESACDDLVDMKTKIQTLAAENTQLKK 164


>At5g56850.2 68418.m07093 expressed protein
          Length = 413

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = +1

Query: 385 RTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTE-----VIYVEEKRNK 549
           +TN++     + S  +       E   L +++D   N  S +  E     ++  E+K   
Sbjct: 59  KTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLS 118

Query: 550 SPKHGYLSAKTPK--SLMSAENTPKKKYKRNNSDLSDERSFNNCN 678
            P+  +  AKTP+  SL+  E T   K +R     S  RS ++ N
Sbjct: 119 KPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSN 163


>At5g56850.1 68418.m07094 expressed protein
          Length = 551

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = +1

Query: 385 RTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTE-----VIYVEEKRNK 549
           +TN++     + S  +       E   L +++D   N  S +  E     ++  E+K   
Sbjct: 197 KTNIQLSSSDVSSSKKVPEVKKLESVSLVKQEDKGLNKPSKKLIEAESVLLVKQEDKGLS 256

Query: 550 SPKHGYLSAKTPK--SLMSAENTPKKKYKRNNSDLSDERSFNNCN 678
            P+  +  AKTP+  SL+  E T   K +R     S  RS ++ N
Sbjct: 257 KPRKKFTEAKTPESVSLVKQEETGLSKPERKPKRKSMRRSMSDSN 301


>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
            NAD(+) ADP-ribosyltransferase, putative /
            poly[ADP-ribose] synthetase, putative similar to
            poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
            contains Pfam profiles PF00644: Poly(ADP-ribose)
            polymerase catalytic domain, PF00645: Poly(ADP-ribose)
            polymerase and DNA-Ligase Zn-finger region, PF02877:
            Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
            BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 516  GSHLRRGKTKQIPEARLFVRENSEITNVCGKHAQKEI 626
            G H  +G  K++P+   F +   ++T  CGK    ++
Sbjct: 915  GKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKV 951


>At1g66245.1 68414.m07520 hypothetical protein
          Length = 287

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 526 YVEEKRNK-SPKHGYLSAKTPKSLMSAENTPKKKYKRNNSDLSDERSFNNCNSATPDQLD 702
           Y E    K +PK   +     + LM  +   KKK   ++     ERS  N      DQLD
Sbjct: 45  YAESNETKETPKVTKIMESMHRKLMLKDKANKKKIHVDDQSQMSERSVRNGGRDRKDQLD 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,607
Number of Sequences: 28952
Number of extensions: 279757
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)