Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.4  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   4.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   4.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 309 TGIDDFSEEDFKCSLPDVTSPNQKVDINRIR 401
           TG+     +DFK + PD+   +  + IN I+
Sbjct: 736 TGVSPGDYKDFKPNNPDIKVEDGTLTINNIQ 766


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 330 EEDFKCSLPDVTSPNQKVDINR 395
           E+D + +L    SPN+K D N+
Sbjct: 123 EKDMETTLTPCASPNRKPDDNQ 144


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
 Frame = -1

Query: 715 FSQCIVLSPFSL*KPKCIHLATIEEPCGKLVSFSI---EEFLNEIANSGCSCLYKHCLNI 545
           FS  ++ S   L   KC   A I  P  K VSF          E   S    L +  +  
Sbjct: 21  FSDAVLSSDEELFHQKCPKPAPIYSPVSKPVSFESLPNRRLHEEFLRSSVDVLLQEAVFE 80

Query: 544 GWNLPSGVLAQSGPTQ 497
           G N  + VL    P +
Sbjct: 81  GTNRKNRVLQWREPEE 96


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 591 LLIVDVRVCISTALILVGIYHPEY*RKAVLPSSHRCT*FCRLIFHLMDQSNQ 436
           +LI D    +++ L    +Y P      VL     C  +C  ++HL  +SNQ
Sbjct: 252 VLIGDAYAVLNSVLFQ-NVYKP---LPIVLSIVKNCLSYCFNLYHLASKSNQ 299


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 591 LLIVDVRVCISTALILVGIYHPEY*RKAVLPSSHRCT*FCRLIFHLMDQSNQ 436
           +LI D    +++ L    +Y P      VL     C  +C  ++HL  +SNQ
Sbjct: 252 VLIGDAYAVLNSVLFQ-NVYKP---LPIVLSIVKNCLSYCFNLYHLASKSNQ 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,317
Number of Sequences: 336
Number of extensions: 3287
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)