Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    32   0.096
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.90 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.7  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   4.8  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   4.8  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 631 KLVSFSIEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINL 461
           K+VS+S+EE LN + +     L+       WN   GVL +SGP++  ++   L+ NL
Sbjct: 194 KVVSWSLEEELNYLKDK---ILFAPDNQSAWNYLCGVLDKSGPSKLDNLIANLRKNL 247


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +3

Query: 273 LLIFIPFVVSEDTGIDDFSEEDFKCSLPDVTSPNQKVDINRIRADFSKISEVKF 434
           ++  IP+  +ED  +++ + E+ K S      P+  +  +++ A  S+I +VKF
Sbjct: 184 MMAIIPYPANEDLDMEEAAIENSKISSSYAYKPSFVLASSQLDASISRILDVKF 237


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 480 KCIDGNWVGPLCAS-TPD 530
           K ++GNWV  +CAS TPD
Sbjct: 921 KTVEGNWVHLICASWTPD 938


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 655 ATIEEPCGKLVSFSIEEFLNEIANSG 578
           A IEE  GK    SIE+ ++EI N G
Sbjct: 173 ALIEEALGKYDVISIEDIIHEIYNVG 198


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 628 LVSFSIEEFLNEIANSGCSCLYKHCLNIGW-NLPSGVLAQSGPTQFP-SMHLILQINLSF 455
           L S  ++  + E++ SG  C+++ C N    ++P+  +  +     P S H +  + +++
Sbjct: 224 LSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITSTAFESIPESGHNVRSLEITY 283

Query: 454 NGPI 443
           +G +
Sbjct: 284 SGSL 287


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 384 DINRIRADFSKISEVKFPGLIGPLNE 461
           ++N +  DF  IS++K   L   LNE
Sbjct: 130 EVNFVNGDFEDISDIKLEQLSAKLNE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,164
Number of Sequences: 5004
Number of extensions: 55492
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)