Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0286 - 2094920-2097805                                           29   2.9  
06_01_0603 - 4350124-4350590,4350995-4353608                           29   5.0  
01_06_1806 + 40012952-40016836                                         28   6.6  
05_07_0023 + 27110491-27110775                                         28   8.7  

>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 553 LNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFN 452
           L++ WN  SG++    P    S+HL+  +N+S+N
Sbjct: 811 LDLSWNRLSGII----PESMTSLHLLSHLNMSYN 840


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 577 CSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFNGPIKPGNLTSDILE 410
           C+C     +++  N  +G +  SG  + PS+  +L  +   +G I P    S +LE
Sbjct: 173 CNCTALQYVDLANNSLAGDIPYSGECRLPSLRYLLLWSNDLSGLIPPALSNSSLLE 228


>01_06_1806 + 40012952-40016836
          Length = 1294

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 628 LVSFSIEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFN- 452
           L+  S  +   +I  S  +C     LN+  NL +G +    P +   +  +  INLSFN 
Sbjct: 654 LLDLSYNQLTGQIPTSIKNCAMVMVLNLQGNLLNGTI----PVELGELTNLTSINLSFNE 709

Query: 451 --GPIKP 437
             GP+ P
Sbjct: 710 FVGPMLP 716


>05_07_0023 + 27110491-27110775
          Length = 94

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 513 CASTPDGRFQPILRQCL-YKHEHPLLAISFRNSSIEKETSFPHGSSIVARC 662
           CAS   G   P    C   K + P L    R+ ++++  + P+G  ++A C
Sbjct: 37  CASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAAC 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,307
Number of Sequences: 37544
Number of extensions: 309332
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)