Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          34   0.10 
SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10)                 32   0.55 
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)              29   2.9  
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)                 29   2.9  
SB_18744| Best HMM Match : Sushi (HMM E-Value=1.1e-05)                 24   8.0  
SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)                 28   8.9  
SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13)                 28   8.9  

>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 603  NSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
            N  I   T   HGSS+   C + GF KL GD    C +G W
Sbjct: 1153 NGKIVSSTGSGHGSSVTVTC-NAGF-KLTGDGVRTCNHGRW 1191



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = +3

Query: 462 RLICKIKCIDGNWVGPLCASTPD--GRFQPILRQCLYKHEHPLLAISF---RNSSIEKET 626
           RL   +K +D + +    A  P+    F P +  C+ K    LL I+F   RN++I ++ 
Sbjct: 204 RLDSTLKAVDWSPLRAKIADIPEICNLFGPCVVTCMTKI---LLHITFGYNRNTTISQKV 260

Query: 627 SFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
              +G  ++ RC    +Y    +  M C+ G +
Sbjct: 261 VSENGKWLMVRCPAGTYYDSLHEKCMRCKPGTY 293


>SB_45743| Best HMM Match : Sushi (HMM E-Value=4.5e-10)
          Length = 206

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 606 SSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
           SS    + F HGSS+   C   G  K++G +T+ CE+G W
Sbjct: 11  SSARNGSDFTHGSSLTYTCQR-GL-KMQGFSTIVCEDGRW 48


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +3

Query: 231  LINNQSINTIMQLLLLIFI---PFVVSEDTGIDDFSEEDF-KCSLPDVTSPNQKVDINRI 398
            + +N+  +T+M+ +  + +   P ++ E   +DDFS +DF K  L D T    K+ I R 
Sbjct: 726  VFHNEGWSTLMRTVHTVLLRSPPHMLQEIVMVDDFSNKDFLKQKLDDYTKKLGKIKIVRT 785

Query: 399  --RADFSKISEVKFPGLIGPLNERLICKIKCIDGNWVGPL 512
              R    K   +     +G +   L    +C  G W+ PL
Sbjct: 786  KERVGLIKARVIGANNAVGEVVIFLDAHCECNKG-WLPPL 824


>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
          Length = 171

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 664 IHLATIEEPCGKLVS---FSIEEFLNEIANSGCSCLYKHCLNIGW 539
           I++     P GK VS     +E+ L EI NSG    ++H L  GW
Sbjct: 78  INVELAGHPLGKKVSRPFMDLEKHLEEIENSGIRTDFEHPLLTGW 122


>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 664 IHLATIEEPCGKLVS---FSIEEFLNEIANSGCSCLYKHCLNIGW 539
           I++     P GK VS     +E+ L EI NSG    ++H L  GW
Sbjct: 78  INVELAGHPLGKKVSRPFMDLEKHLEEIENSGIRTDFEHPLLTGW 122


>SB_18744| Best HMM Match : Sushi (HMM E-Value=1.1e-05)
          Length = 77

 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 624 TSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
           +SF +   +   C   G Y L+G   + C NG W
Sbjct: 36  SSFKNMGVVQFMCTREG-YDLQGPGAIRCINGTW 68



 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 480 KCIDGNWVGP 509
           +C+DGNW  P
Sbjct: 8   QCVDGNWTTP 17


>SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)
          Length = 803

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 627 SFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
           S+ HG  +   C + G Y+L G   + C NGEW
Sbjct: 77  SYRHGDHVTYSC-NQG-YRLVGTRNITCYNGEW 107


>SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13)
          Length = 124

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 627 SFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
           S+ HG  +   C + G Y+L G   + C NGEW
Sbjct: 77  SYRHGDHVTYSC-NQG-YRLVGTRNITCYNGEW 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,676,662
Number of Sequences: 59808
Number of extensions: 373870
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)