Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    35   0.068
Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    29   3.4  

>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 570 HEHPLLAISFRNSSIEKETSFPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
           + H ++  + +  ++    +F  GS ++ RC + G  +L G   + C NG W
Sbjct: 317 NSHTVIYHTQKKETVVFNQNFESGSKLLFRCANIGLEQLHGKKELQCYNGVW 368


>Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical
           protein F36H2.5 protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
 Frame = +3

Query: 423 EVKFPGLI--GPLNERLICKIKCIDG-NWVGPLCASTPDGRFQPILRQCLYKHEHPLLAI 593
           E+ F G    G   +     +KC  G    GP  ++   G F+PI+ +C    EH L  +
Sbjct: 269 EITFSGFSTKGTFEDGTTAALKCNLGYKPTGPSFSTCRKGSFRPIIGKCSNGSEHQLPGV 328

Query: 594 --------SFRNSSIEKETS--FPHGSSIVARCIHFGFYKLKGDNTMHCENGEW 725
                   + R   I+  TS  F  G++ +  C   GF  + G  T+ CE G+W
Sbjct: 329 CVPLTPPKNARVVYIQSGTSLDFEDGTTALLYC-EEGF-AVTGVATLRCETGQW 380


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 613 IEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFNGPIKPG 434
           +E+F+ ++ ++  +CLY+ CL      P        PT  P+    L  N + +GP +  
Sbjct: 226 VEKFIGQVNSAQGNCLYQRCLKPTTPAPPTTSTAPPPTTTPNP--CLAFNCTGSGPCQLD 283

Query: 433 NL 428
           +L
Sbjct: 284 SL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,864
Number of Sequences: 27780
Number of extensions: 303801
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)