Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k03
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23250.1 68417.m03352 protein kinase family protein contains ...    33   0.26 
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    30   1.4  
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    29   2.4  
At2g38330.1 68415.m04709 MATE efflux family protein low similari...    29   4.2  
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s...    28   7.3  
At5g44530.1 68418.m05455 subtilase family protein contains Pfam ...    27   9.6  

>At4g23250.1 68417.m03352 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 998

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = +3

Query: 342 KCSLPDVTSPNQKVDINRIRADFSKISEVKFPG-----LIGPLNERLICKIKCIDGNWVG 506
           KC    +  PN K DINR     S  S V   G      IG   +RL     CI G+   
Sbjct: 691 KCGKTGLFKPNDKYDINRHLLLSSLASNVSARGGFYNASIGQGPDRLYASGTCIQGS-EP 749

Query: 507 PLCASTPDGRFQPILRQC 560
            LC++  D  F  ++++C
Sbjct: 750 ELCSACIDSAFIRVIKKC 767


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -1

Query: 625 VSFSIEEFLNEIANSGCSCLYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFNGP 446
           +  S   F     ++    L  + LN+ +N  +G L +  PT +P + ++   + S  GP
Sbjct: 391 LDLSQNHFTGSFPDATPQLLRANHLNLSYNKLTGSLPERIPTHYPKLRVLDISSNSLEGP 450

Query: 445 IKPGNLTS 422
           I PG L S
Sbjct: 451 I-PGALLS 457


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = -1

Query: 568 LYKHCLNIGWNLPSGVLAQSGPTQFPSMHLILQ----INLSFNGPIKPGNLTSDILEKSA 401
           +Y++ L IGW     + +Q+ P   P  H+ ++     NL F+G   P  +TS   + S 
Sbjct: 248 VYEYELKIGWGKAVSLPSQALPAPPPG-HMAIRSKEGCNLVFSGQTGPPIITSVPNQNSE 306

Query: 400 RILFISTF*LGLVTSGREHLK 338
            +L  +   + +VT   EHL+
Sbjct: 307 LVLTPNVPDITVVTPEDEHLR 327


>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 521

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -1

Query: 553 LNIGWNLPSGVLAQSGPTQFPSMHLILQINLSFNGPIKPGNLTSDILEKSARILFISTF* 374
           L + + L + + AQ+GPTQ     ++L+I L+        +L +D L  +A+ L  +T+ 
Sbjct: 322 LLVPFTLATSLAAQNGPTQMAGHQIVLEIWLAV-------SLLTDALAIAAQSLLATTYS 374

Query: 373 LGLVTSGREHL 341
            G     RE L
Sbjct: 375 QGEYKQAREVL 385


>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
           similarity to SKP1 interacting partner 2 GI:10716949
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00646 F-box domain
          Length = 522

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 712 SQCIVLSPFSL*K-PKC--IHLATIEEPCGKLVSFSIEEF-LNEIANSGCSCLYKHCLNI 545
           S+C  L    + K P C  + LA++ E C  L    I+ + +  I + G   + KHCLN+
Sbjct: 278 SKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWRVKRIGDQGLMSVAKHCLNL 337


>At5g44530.1 68418.m05455 subtilase family protein contains Pfam
           profiles: PF00082 subtilase family
          Length = 840

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 550 NIGWNLPSGVLAQSGPTQF 494
           N+GW+ P GV  +  PTQF
Sbjct: 771 NVGWSPPYGVSMKVSPTQF 789


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,865
Number of Sequences: 28952
Number of extensions: 270380
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)