Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k02
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   114   1e-26
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   113   2e-26
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.4  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  

>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  114 bits (274), Expect = 1e-26
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 2/151 (1%)
 Frame = +2

Query: 266 FLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDY 442
           F +KHPL   W+LWF         W E    + TF++VE+FW ++++I   S L    DY
Sbjct: 34  FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDY 93

Query: 443 AVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICG 619
           + F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+ G
Sbjct: 94  SFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMG 152

Query: 620 AVVNVRPKVDKIAIWTADAMKQHATIEIGEK 712
            V+N+R    ++A+WT     +   +EIG +
Sbjct: 153 VVINMRKGFYRLAVWTKSCNNREVLMEIGTR 183


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  113 bits (272), Expect = 2e-26
 Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
 Frame = +2

Query: 245 NAEVPPEFLIKHPLQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSE 421
           NAE    F+  HPLQ++W+LWF     +   W + L E+ +F TVE+FW ++  I   S 
Sbjct: 55  NAETA--FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASM 112

Query: 422 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE- 598
           L    DY+ F +GIRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  + 
Sbjct: 113 LPAKSDYSYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDP 170

Query: 599 NSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIG 706
              E+ G V N+R    +IA+WT +   +    +IG
Sbjct: 171 TGKEVTGVVCNMRKGFYRIAVWTRNCNDKDVLEKIG 206


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -1

Query: 624  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 445
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 444  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 328
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 266 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 367
           F I+  L+   +  FY N +NK W  N  +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 273 SSTRYKTSGVSGFTTMTETKHG 338
           ++T Y TSG  GFTT   T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 461 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 571
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,034
Number of Sequences: 5004
Number of extensions: 61291
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)