Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11k02
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 136 2e-32
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 131 6e-31
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 125 3e-29
02_04_0430 + 22834405-22834839 29 3.8
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 5.1
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 28 6.7
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 6.7
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 6.7
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 7.1
02_02_0106 + 6814391-6817007,6817086-6817462 28 8.8
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 136 bits (329), Expect = 2e-32
Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 6/168 (3%)
Frame = +2
Query: 227 ETKTNSNAEVPPEF--LIKHPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFW 388
E + + PP+ HPL++ W+ WF DN + K TW ++ + TF TVEDFW
Sbjct: 33 EIADDDSGHAPPQANPAAPHPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFW 91
Query: 389 RLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDV 568
LY++I PS+L G D+ FK I P WED GG+W S + + D WL
Sbjct: 92 SLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHT 147
Query: 569 VLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGEK 712
+L +IGE F+ DEICGAVV+VR K ++IAIWT +A + A I IG++
Sbjct: 148 LLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQ 195
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 131 bits (316), Expect = 6e-31
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Frame = +2
Query: 227 ETKTNSNAEVPPEFLIKHPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLY 397
ET + AE H L QW+ W+ + K W +L + TFDTVE+FW LY
Sbjct: 13 ETPEVAAAEGAAAAKAPHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLY 72
Query: 398 HHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLL 577
I PS++ D+ +FK G+ P WED GG+W + +K T L+ WL+ ++
Sbjct: 73 DQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMA 129
Query: 578 LIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHATIEIGEK 712
LIGE F+ S+EICG V +VR + DK+A+WT A + + IG+K
Sbjct: 130 LIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKK 174
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 125 bits (302), Expect = 3e-29
Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Frame = +2
Query: 278 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 448
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 449 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 628
FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 629 NVRPKVDKIAIWTADAMKQHATIEIGEKTER 721
+VR D +++W +A A + + + +R
Sbjct: 165 SVRFNEDILSVWNRNASDHQAVMTLRDSIKR 195
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 525 FSRLISHLPPILLASSSHIGRM 460
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 248 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 343
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 169 KNIVIFVEVV*RLNPEYFYTEN 104
K I++F++VV L P+Y Y EN
Sbjct: 1051 KQIIVFMDVVQFLKPKYVYMEN 1072
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 542
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 422 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 565
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 7.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +3
Query: 393 CTIILSYRQNFAKVMTMQYSSKAFVLC 473
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 459 AFVLCGKTMLTRWEEDGLSVLRKN 530
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 612 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 457
+ SE K SP+ SN NLS + CF +L S I++ ++S G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,633
Number of Sequences: 37544
Number of extensions: 361989
Number of successful extensions: 821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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