Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k01
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    27   3.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   3.4  
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28...    26   4.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   6.0  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.9  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   7.9  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 256 WYIRNMRSESRVVGGKPSQPTAWPWTVAIYRNGMFHCGGVIITQN 390
           ++I  M +++ +    P   +A P+  AI  NG+ +C G I   N
Sbjct: 31  FFIHKMSTKTPI--NSPKLSSAGPYNQAIKANGVIYCSGQIPVAN 73


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 214 LLNYWRNRNELNRPWYIRNMRSESR 288
           LLNYW N  + N+P  + ++ + SR
Sbjct: 175 LLNYWENAYDGNKPSSVYSLAAHSR 199


>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 169 FGNRQKRSLVYHNYDLLNYWRNRNELNRPWYIRNMRSESR 288
           +GN++ RSL   N D+   W     +NR W I   R E +
Sbjct: 28  YGNKKVRSLKM-NPDM---WEKHEVINRAWRIHEYRQEKQ 63


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 338 PYTETACFIVVELLSLKTGLYLLRIAYINFGITTMKFKQVCFGV---SRFHRKNKTI 499
           PY E +   ++ LL L    Y+L   YI FG T+     +  G    S FH  +  I
Sbjct: 15  PYIEHSVIPIIALLVLSLIFYIL---YICFGTTSYILSGIILGAYVNSLFHNNHSVI 68


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 294 WWKTKSTHGLAMDGSHIQK 350
           +W  + THG+ +DG H QK
Sbjct: 255 FWDMR-THGITIDGEHFQK 272


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -2

Query: 649 TNQDQQYQVPVSILDEPID*TE*LARPLVETSHFSYRLVCNAGLQSHVLLDGFVLAVKTR 470
           +++DQ Y + +     PI     +A+  +    F++  +   G +  +L   F LAV   
Sbjct: 76  SSEDQAYALCIDSFSNPIGLL--MAQGNIS---FAHAFMMTLGRKCRILTRKFRLAVYLS 130

Query: 469 NAEAYLLELHSSDPKI 422
            +  Y+ +LH S P +
Sbjct: 131 TSLVYIKQLHLSKPAL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,157
Number of Sequences: 5004
Number of extensions: 68593
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)