Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11k01
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    34   0.10 
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    30   1.3  
At5g54590.2 68418.m06797 protein kinase family protein contains ...    29   3.9  
At5g54590.1 68418.m06796 protein kinase family protein contains ...    29   3.9  
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t...    28   5.2  
At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family p...    28   6.8  
At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger) fa...    28   6.8  

>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 29/99 (29%), Positives = 46/99 (46%)
 Frame = -3

Query: 558 QVIFHIVLFVMLVYNHMCYLMVLFLR*KRETPKHTCLNFIVVIPKFMYAMRSRYNPVLSD 379
           +V F   +F +  + HM   +   LR +R        N ++    F++   S+   +L+ 
Sbjct: 128 RVFFWSYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFLWLEFSQSYQILAI 187

Query: 378 NNSTTMKHAVSVYGYRPWPSRGLTWFSTNHSAFRSHISN 262
             STT+ ++V VYGYR W     T F    SAF S + N
Sbjct: 188 L-STTLVYSV-VYGYRFW-----TGFGLPGSAFPSFVVN 219


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 453 RYASAFLVFTARTKPSSNTCDCKPALQTRRY 545
           R +S FL  T++ + SS+TC+  PAL T  Y
Sbjct: 221 RSSSKFLRGTSKREDSSHTCNSTPALSTSSY 251


>At5g54590.2 68418.m06797 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 440

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 590 SVDGFVQYAYRDL-----ILLVLIGYGAHHPVLSALL*AGE 697
           S  G ++Y+YRDL         LIG GA  PV  A +  GE
Sbjct: 96  SASGILEYSYRDLQKATCNFTTLIGQGAFGPVYKAQMSTGE 136


>At5g54590.1 68418.m06796 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 261

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +2

Query: 590 SVDGFVQYAYRDL-----ILLVLIGYGAHHPVLSALL*AGE 697
           S  G ++Y+YRDL         LIG GA  PV  A +  GE
Sbjct: 96  SASGILEYSYRDLQKATCNFTTLIGQGAFGPVYKAQMSTGE 136


>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
           SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
           (Ascorbase) {Cucumis sativus}; contains Pfam profile
           PF00394: Multicopper oxidase
          Length = 582

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
 Frame = +1

Query: 223 YWRNRNELNRPWYIRNMRSESRVVGGKPSQPTAWPWTVAIYRNGMFHCGGVIITQNWVIS 402
           Y  +RN L   WY ++M  ++  +   P +    P ++ I   G F+C   + T   ++S
Sbjct: 165 YDYDRNFLLTDWYHKSMSEKATGLASIPFKWVGEPQSLMIQGRGRFNCSNNLTTPPSLVS 224

Query: 403 A------AHC----VHKFWDHYYEVQAGMLRRFS-FSPQEQNHQVTHVIVNQHY 531
                  A C    +       Y ++ G L   S  S Q + H +T V  + HY
Sbjct: 225 GVCNVSNADCSRFILTVIPGKTYRLRIGSLTALSALSFQIEGHNLTVVEADGHY 278


>At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family
           protein similar to pantothenate kinase [Emericella
           nidulans] GI:4191500; contains Pfam profiles PF03630:
           Fumble, PF01937: Protein of unknown function
          Length = 901

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 196 VYHNYDLLNYWR-NRNELNRPWYIRNMRS-ESRVVGGKPSQP 315
           +YH   ++  +R +RN++ RPW + +  + + R++G    QP
Sbjct: 679 LYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKQP 720


>At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 196

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 435 VIPKFMYAMRSRYN----PVLSDNNSTTMKHAVSVYGYRPWPSRGLTWFSTNHSAFRSHI 268
           ++P    A R R++    P+ S N ++    A  V+  RP      + ++TNH + ++H+
Sbjct: 4   MLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRP----SFSLYTTNHESHQAHV 59

Query: 267 SNIPRSI 247
           S   RS+
Sbjct: 60  SFSERSV 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,760
Number of Sequences: 28952
Number of extensions: 357135
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)