Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j24
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 102 2e-22
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 102 2e-22
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 98 3e-21
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 98 3e-21
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 98 3e-21
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 92 3e-19
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 88 5e-18
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 85 5e-17
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 79 2e-15
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 61 5e-10
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 60 1e-09
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 60 1e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 59 2e-09
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 58 4e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 57 1e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 57 1e-08
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 55 3e-08
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 55 3e-08
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 54 6e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 54 1e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 53 1e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 53 2e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 53 2e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 4e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 4e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 48 5e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 48 5e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 6e-06
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 48 6e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 47 1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 1e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 46 1e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 46 1e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 46 3e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 45 3e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 3e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 45 4e-05
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 45 4e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 45 4e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 6e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 44 6e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 6e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 8e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 8e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 8e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 1e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 1e-04
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 43 1e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 43 1e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 2e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 42 2e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 42 4e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 5e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 41 5e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 41 5e-04
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 41 5e-04
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 41 7e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 7e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.001
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 40 0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 0.001
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 40 0.001
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 40 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.002
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 39 0.002
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.002
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 39 0.003
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.004
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 38 0.004
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.004
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.004
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.007
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 38 0.007
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.009
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.009
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 37 0.009
At5g51300.2 68418.m06360 splicing factor-related contains simila... 37 0.012
At5g51300.1 68418.m06359 splicing factor-related contains simila... 37 0.012
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.012
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.012
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.012
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 37 0.012
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.012
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.012
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 37 0.012
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 36 0.021
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 36 0.021
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 36 0.021
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 36 0.021
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 36 0.021
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.021
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.027
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.027
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.027
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.027
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 36 0.027
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 36 0.027
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.027
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.027
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.027
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 35 0.036
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.048
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 35 0.048
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.048
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.048
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.048
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.048
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.063
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.063
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.063
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 34 0.083
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 34 0.083
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.083
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.083
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 33 0.11
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 33 0.15
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.15
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.15
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.15
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.15
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 33 0.19
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.19
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 33 0.19
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.19
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.19
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.19
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.25
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.25
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.25
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.34
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.34
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 32 0.34
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.44
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.44
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.44
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.44
At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR) domai... 31 0.59
At1g05510.1 68414.m00563 expressed protein 31 0.59
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.78
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.78
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.78
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.78
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.78
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.78
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.78
At2g31985.1 68415.m03909 expressed protein 30 1.0
At1g79975.2 68414.m09353 expressed protein 30 1.0
At1g79975.1 68414.m09352 expressed protein 30 1.0
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 1.4
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 1.4
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.4
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 30 1.4
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 30 1.4
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 30 1.4
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 1.8
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 29 1.8
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 1.8
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.4
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.4
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.4
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.1
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 3.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 4.1
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 27 7.2
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 27 7.2
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 27 7.2
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 27 7.2
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 27 7.2
At1g17430.1 68414.m02130 hydrolase, alpha/beta fold family prote... 27 9.6
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 102 bits (245), Expect = 2e-22
Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
+YVG LP +RER++E F +G + I +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 340 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 510
+ G + VE A G RS+ R G P R+EYR++V L
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128
Query: 511 SRISWQDLKDYMRQAGEVTYADAHKQHR 594
S SWQDLKD+MR+ GEV ++ + R
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGR 156
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 102 bits (245), Expect = 2e-22
Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
+YVG LP +RER++E F +G + I +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 340 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 510
+ G + VE A G RS+ R G P R+EYR++V L
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128
Query: 511 SRISWQDLKDYMRQAGEVTYADAHKQHR 594
S SWQDLKD+MR+ GEV ++ + R
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGR 156
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 98.3 bits (234), Expect = 3e-21
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 340 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 513
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 514 RISWQDLKDYMRQAGEVTYADAHKQHR 594
SWQDLKD+MR+ G+V ++ ++ R
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDAR 155
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 98.3 bits (234), Expect = 3e-21
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 340 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 513
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 514 RISWQDLKDYMRQAGEVTYADAHKQHR 594
SWQDLKD+MR+ G+V ++ ++ R
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDAR 155
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 98.3 bits (234), Expect = 3e-21
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 7/147 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 340 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 513
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 514 RISWQDLKDYMRQAGEVTYADAHKQHR 594
SWQDLKD+MR+ G+V ++ ++ R
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDAR 155
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 91.9 bits (218), Expect = 3e-19
Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 339
+YVG LP +R+ ++E F +G I DI +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 340 ELLGERVVVEPARGIDR---SADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 510
+ G R+ VE A G R S DRY P R++YR++V L
Sbjct: 69 DFDGCRLRVEIAHGGRRFSPSVDRYSSS-----------YSASRAPSRRSDYRVLVTGLP 117
Query: 511 SRISWQDLKDYMRQAGEVTYAD 576
SWQDLKD+MR+AG+V +++
Sbjct: 118 PSASWQDLKDHMRKAGDVCFSE 139
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 87.8 bits (208), Expect = 5e-18
Identities = 58/144 (40%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 339
+YVG LP +RE ++E F +GRI DI +K Y FVEFE RDA+DA+ +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 340 ELLGERVVVEPARGI--DRSADR---YRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 504
L G R+ VE A G S+DR Y G +E+R+IV
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSEFRVIVRG 128
Query: 505 LSSRISWQDLKDYMRQAGEVTYAD 576
L S SWQDLKD+MR+AG+V +A+
Sbjct: 129 LPSSASWQDLKDHMRKAGDVCFAE 152
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 84.6 bits (200), Expect = 5e-17
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 348
+R+YVG L R RDLE+ F +GR+RD+ +K Y FVEF D RDADDA Y L+G++
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 349 GERVVVEPARGIDR-SADRYRRG 414
G R+ VE +RG R S D RG
Sbjct: 71 GSRITVEASRGAPRGSRDNGSRG 93
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 348
+R+YVG L R RDLE+ F +GR+RD+ +K Y FVEF D RDADDA + L+G++
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 349 GERVVVEPARGIDR-SADRYRRG 414
G R+ VE +RG R S D RG
Sbjct: 71 GSRITVEFSRGAPRGSRDFDSRG 93
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 61.3 bits (142), Expect = 5e-10
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 339
SRVYVG L V ER+LE F+ FG IR + + GY F++FED RDA DA+ E++GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 340 ELLGERVVVEPARG 381
G RV RG
Sbjct: 62 N--GWRVEQSHNRG 73
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 339
SRVYVG L V ER+LE F+ FG +R + + GY F++FED RDA DA+ L+GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 340 ELLGERVVVEPARGIDRSADRYRRGDR 420
G RV RG +R R GDR
Sbjct: 62 N--GWRVEQSHNRG-ERGGGG-RGGDR 84
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAV 321
VYVG + R DLE+ F FGR++ + +K+GY FV FED RDA+DA+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAI 52
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 193 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
P RERD+E+ F+ +G++ ++ ++ + FV+F DA A+ + +LL + V VE
Sbjct: 104 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 163
Query: 373 A-RGIDRSADRY 405
A R DRY
Sbjct: 164 ALREAGEREDRY 175
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 59.3 bits (137), Expect = 2e-09
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 321
GSR++VGGL V +RDLE+ F FG I D I G+GF+ F D R D+++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 322 YELNGKELLGERVV----VEPARGIDRSADRYRRGDR 420
E++G++ G+RV+ EP G D RG R
Sbjct: 66 REMHGRD-FGDRVISVNRAEPKLGRDDGESHGSRGGR 101
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 354
V+VG + R+ DLE+ F +GR+ + +K+GY FV FED RDA+DA+ +L+ E
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 355 --RVVVEPARG 381
R+ VE A+G
Sbjct: 64 KRRLSVEWAKG 74
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 193 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
P +E D+EK F+ +G++ ++ I+ + FV+FE DA A+ ++L V VE
Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEY 161
Query: 373 ARGIDRSADRYRRGDR 420
A D D R G R
Sbjct: 162 ALKDDDERDD-RNGGR 176
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
SR++VGGL + V ER LE F +G+I RD G+GF+ F D R ADDA+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 325 ELNGKELLGERVV----VEPARGIDRSADRYRRG 414
++G+E LG +V+ EP G D+ ++G
Sbjct: 72 HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
SR++VGGL + V ER LE F +G+I RD G+GF+ F D R ADDA+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 325 ELNGKELLGERVV----VEPARGIDRSADRYRRG 414
++G+E LG +V+ EP G D+ ++G
Sbjct: 72 HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 339
+RVYVG L V ER+LE FK FG +R++ + GY F+EF+D RDA DA+ L+ K
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 340 ELLGERVVVEPARGIDRSADRYRRG 414
G RV + R RRG
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGRRG 84
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 339
+RVYVG L V ER+LE FK FG +R++ + GY F+EF+D RDA DA+ L+ K
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 340 ELLGERVVVEPARGIDRSADRYRRG 414
G RV + R RRG
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGRRG 84
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-------YGFVEFEDYRDADDAVY 324
G+ VYVGGLP+ + E + + F +G + + I N YGFV F + R ADDA+
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIE 65
Query: 325 ELNGKELLGERVVV 366
+++GK + G V V
Sbjct: 66 DMDGKSIGGRAVRV 79
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.4 bits (125), Expect = 6e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 328 LNGKELLGERVVVEPAR 378
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.4 bits (125), Expect = 6e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 328 LNGKELLGERVVVEPAR 378
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.4 bits (125), Expect = 6e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 328 LNGKELLGERVVVEPAR 378
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 348
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 349 GERVVVEPARGIDRSADRYRRG 414
G R+ VE + +R D+ G
Sbjct: 64 GRRLRVEWTKS-ERGGDKRSGG 84
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +1
Query: 205 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 369
R RDLEK F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 110 RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169
Query: 370 -PARGIDRSADRYR 408
ARG S +R R
Sbjct: 170 DDARGNGHSPERRR 183
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 414
+K Y FVEF D RDADDA Y L+G++ G R+ VE +RG R S D RG
Sbjct: 1 MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRG 52
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 348
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 349 GERVVVE 369
G R+ VE
Sbjct: 64 GRRLRVE 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Frame = +1
Query: 205 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 369
R RDLE+ F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168
Query: 370 ---------PARGIDRSADRYRR 411
P R DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 348
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 349 GERVVVE 369
G R+ VE
Sbjct: 64 GRRLRVE 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Frame = +1
Query: 205 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 369
R RDLE+ F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168
Query: 370 ---------PARGIDRSADRYRR 411
P R DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+++ +++++GGL +G + L F FG + D + G+GFV F D A
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 313 DAVYELNGKELLGERVVVEPA 375
A+ E++GKEL G + V PA
Sbjct: 91 AAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+++ +++++GGL +G + L F FG + D + G+GFV F D A
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 313 DAVYELNGKELLGERVVVEPA 375
A+ E++GKEL G + V PA
Sbjct: 91 AAISEMDGKELNGRHIRVNPA 111
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Frame = +1
Query: 166 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAV 321
GS+ ++ G L + + D+E FFK G + D+ + + GYG +EF +A A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 322 YELNGKELLGERVVVEPA--RGIDRSADRYRRGD 417
E+NGK LLG V ++ A RG R+++ R+G+
Sbjct: 442 -EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGE 474
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+ + S+++VGGL +G + L++ F FG + + + G+GFV F A+
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 313 DAVYELNGKELLGERVVVEPA 375
+A+ E++GKEL G ++ V A
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+ + S+++VGGL +G + L++ F FG + + + G+GFV F A+
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 313 DAVYELNGKELLGERVVVEPA 375
+A+ E++GKEL G ++ V A
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.0 bits (109), Expect = 5e-06
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 330
VYVGG+PF + E DL F +G I D+ LI++ G+ F+ +ED R AV L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 331 NGKELLGERVVVE 369
NG +LG + V+
Sbjct: 98 NGALVLGRTIKVD 110
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 414
+K Y FVEF D RDADDA + L+G++ G R+ VE +RG R S D RG
Sbjct: 1 MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 52
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
R ++GGL + +R L F+ +G + + + G+GF+ F++ + D+A+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDR 420
+NG +L G + V+ A+ A R GDR
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDR 98
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 193 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
P RERD+E+ F+ +G++ ++ ++ + FV+F DA A+ + +LL + V VE
Sbjct: 78 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 137
Query: 373 A-RGIDRSADRY 405
A R DRY
Sbjct: 138 ALREAGEREDRY 149
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAV 321
I GY FV FED RDA+DA+
Sbjct: 7 IDAGYAFVYFEDERDAEDAI 26
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
+ +RVYVG L + L + F G+G + D ++ G+GFV + + +A+ A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 319 VYELNGKELLGERVVVE 369
V ++GKEL G RV V+
Sbjct: 61 VSGMDGKELNGRRVSVK 77
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 348
++VGG+ V + DL + F FG + + I G GFV+F D + A+DA+ LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG-TVI 381
Query: 349 GERVVVEPARGIDRSADRYRRGD 417
G+ V RS ++ RGD
Sbjct: 382 GKNTV---RLSWGRSPNKQWRGD 401
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNG 336
GYGFV F D + A+ E+NG
Sbjct: 245 GYGFVRFGDENERSRALTEMNG 266
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + +R LE F +G + D I N G+GFV F+D + DA+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 328 LNGKELLGERVVVEPAR 378
+NG++L G + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + +R LE F +G + D I N G+GFV F+D + DA+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 328 LNGKELLGERVVVEPAR 378
+NG++L G + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 321
G+RVYVG L +GV + LE F G++ RD G+GFV ++ ++ +A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 322 YELNGKELLGERVVVEPA 375
L+G +L G ++ V A
Sbjct: 263 KSLDGADLDGRQIRVSEA 280
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VG LPF V L + F+ G + + + G+GFV + + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 507
NG EL G + V + D + RG R + R+ V NL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 508 SSRISWQDLKDYMRQAGEVTYA 573
S + L+ + G+V A
Sbjct: 212 SWGVDDMALESLFSEQGKVVEA 233
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +1
Query: 106 SITC*FNFES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------- 264
SI+ F+F F S++++GGL + V E+ L+ F FG + ++ I
Sbjct: 20 SISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSG 79
Query: 265 -KNGYGFVEFEDYRDADDAVYELNGKELLG 351
G+GFV+F + DA A ++GK LLG
Sbjct: 80 RSRGFGFVDFAEEGDALSAKDAMDGKGLLG 109
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 342
S ++VGGL V E DL + F FG + + I G GFV+F + + A++A+ LNG
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNG-T 385
Query: 343 LLGERVV 363
++G+ V
Sbjct: 386 VIGKNTV 392
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNG 336
GYGFV F D + A+ E+NG
Sbjct: 256 GYGFVRFGDENERSRAMTEMNG 277
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +1
Query: 202 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
V RDLE F +G I++I K + FVEF D R AD A+ LN E+ G+R+ +E
Sbjct: 233 VSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEH 292
Query: 373 AR 378
+R
Sbjct: 293 SR 294
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 336
+ + ++VGGL V + DL++ F FG I + I G GFV+F + +A++A+ +LNG
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 337 KELLGERVV 363
++G++ V
Sbjct: 364 -TVIGKQTV 371
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNG 336
GYGFVEFE + AD + E NG
Sbjct: 147 GYGFVEFESHDVADKVLQEFNG 168
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/98 (24%), Positives = 40/98 (40%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 450
GYGFV F D + A+ E+NG + + + PA R + Y++ +
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPSGAFTRS 299
Query: 451 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEV 564
T + V L S ++ +DLK + GE+
Sbjct: 300 EGDTINTT-----IFVGGLDSSVTDEDLKQPFSEFGEI 332
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 328 LNG 336
+NG
Sbjct: 67 MNG 69
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG--YGFVEFEDYRDADDAVYELNGKELL 348
++VG LP G+ ER+L F FG + + + G Y FV F DA A+ L G L
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLS 84
Query: 349 GERVVVEPARGIDRSADRYRRGD 417
G + +E A+ ++S+ R D
Sbjct: 85 GNPLRIEFAKA-EKSSTGSRTDD 106
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELN 333
++ + ++VGGL V + DL++ F FG I + I G GFV+F + +A++A+ +LN
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 334 GKELLGERVV 363
G ++G++ V
Sbjct: 361 G-TVIGKQTV 369
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNG 336
+ GYGFVEFE + AD + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166
Score = 30.7 bits (66), Expect = 0.78
Identities = 24/98 (24%), Positives = 40/98 (40%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 450
GYGFV F D + A+ E+NG + + + PA R + Y++ +
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPNGTLTRP 297
Query: 451 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEV 564
T + V L S ++ +DLK + GE+
Sbjct: 298 EGDIMNTT-----IFVGGLDSSVTDEDLKQPFNEFGEI 330
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 342
VYVG + V E L++ F G G + + K+ YGFV + D R A A+ LNG+
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 343 LLGERVVV 366
L G+ + V
Sbjct: 116 LFGQPIKV 123
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
V S++++GGL F E+ L + F G++ + I G+GFV F +A A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 319 VYELNGKELLGERVVVEPAR 378
+ E NG++L G + V+ A+
Sbjct: 92 LMEFNGQQLNGRTIFVDYAK 111
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +1
Query: 205 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 369
R RDLEK F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 69 RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 128
Query: 370 -PARGIDRSADRYR 408
ARG S +R R
Sbjct: 129 DDARGNGHSPERRR 142
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = +1
Query: 181 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 336
V L R+ DL K F+ FG ++DI + G+GFV+F D DA DA + ++G
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
Query: 337 KELLGERVVV 366
LLG + V
Sbjct: 100 YLLLGRELTV 109
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 328 LNGKELLGERVVVEPA 375
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 328 LNGKELLGERVVVEPA 375
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 328 LNGKELLGERVVVEPA 375
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 321
G+R+YVG L +GV + LE F G++ RD G+GFV ++ A+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 322 YELNGKELLGERVVVEPA 375
LNG +L G ++ V A
Sbjct: 308 NSLNGADLDGRQIRVSEA 325
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VG L F V L + F+ G + + + G+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDR 420
NG E G + V + + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 321
G+R+YVG L +GV + LE F G++ RD G+GFV ++ A+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 322 YELNGKELLGERVVVEPA 375
LNG +L G ++ V A
Sbjct: 316 NSLNGADLDGRQIRVSEA 333
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VG L F V L + F+ G + + + G+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDR 420
NG E G + V + + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 321
G+ +YV GL V ERDLE F G++ D+ + G+GF+ + DA+ +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 322 YELNGKELLGERVVVEPAR 378
L+ L G + VE AR
Sbjct: 134 RSLDHSVLQGRVITVEKAR 152
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVEFEDYRDADDAVYELNGKELL 348
++VGGL V + +L+ F FG + + I G GFV++ + A+ A+ LNG +L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 349 GERVVVEPARGIDRSADR 402
G+ + + R ++ +D+
Sbjct: 322 GQSIRLSWGRSPNKQSDQ 339
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 375
GYGFV F D + A+ E+NG+ + + PA
Sbjct: 197 GYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+ + +++Y+GGL G E L+ F F + + + GYGFV F A+
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 313 DAVYELNGKELLGERVVVEPAR 378
A+ +NG+EL G + V A+
Sbjct: 87 SAISAMNGQELNGFNISVNVAK 108
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 43.2 bits (97), Expect = 1e-04
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 333
++V LP+ + ++ FFK G + R LI N G GFVEF +A++A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 334 GKELLGERVVVEPA-RGIDRSADRY----RRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 498
G+ L ++ ++ A + +Y + D+ PP E L V
Sbjct: 189 GECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLFV 248
Query: 499 ENLSSRISWQDLKDYMRQAGEV 564
NLS + D+ D+ GEV
Sbjct: 249 ANLSPQTKISDIFDFFNCVGEV 270
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 333
++V L + + KFFK + R LI N G GFVEF +A A+ ++N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 334 GKELLGERVVVE 369
G+ L + ++
Sbjct: 551 GENLRSREIFLD 562
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 333
++V L + D+ FF G + I L+ N GYGFVEF + A+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 334 GKELLGERVVVEPAR 378
G+ L ++ ++ A+
Sbjct: 306 GEYLHDHKIFIDVAK 320
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAV 321
GS V++GGLP V E DL + G I ++ L+K+ GY FV F+ A A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 322 YELNGKELLGERV 360
EL+ KE G+ +
Sbjct: 175 EELHSKEFKGKTI 187
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
++++ GL F E+ L F+GFG + ++ I GY F+E+ A A+ E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 328 LNGKELLGERVVVEPAR 378
+NGK + G +VV+ A+
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
+++YVGGLP+ R+ L FFK FG I R+ GYGFV F+D A A
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 325 ELN 333
+ N
Sbjct: 73 DPN 75
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD----D 315
+++VGGLP + E + + +F FG I D+++ G+GF+ F+ D
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 316 AVYELNGKELLGERVV 363
+ELNGK + +R V
Sbjct: 183 TFHELNGKMVEVKRAV 198
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRD--ILI------KNGYGFVEFEDYRDADDAVYE 327
R +VGGL + E+ +E+ F FG + D I+I G+ FV F+D A+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 328 LNGKELLGERVVVEPARG 381
+NG+EL G + + ARG
Sbjct: 105 MNGQELDGRNITAQ-ARG 121
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 92
Query: 328 LNGKELLGERVVVEPARGIDRSADRYR 408
EL G+ V V+ A D + + R
Sbjct: 93 KTFHELNGKMVEVKLAVPKDMALNTMR 119
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165
Query: 328 LNGKELLGERVVVEPARGIDRSADRYR 408
EL G+ V V+ A D + + R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192
Score = 35.1 bits (77), Expect = 0.036
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+M ++++GG+ + E L +F FG + + +I G+GFV F D A+
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 313 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 492
V K ++ + +VE + + R D H P+ ++ ++
Sbjct: 62 RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108
Query: 493 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE 600
V L+S ++ + K Y Q G +T HR +
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQ 144
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165
Query: 328 LNGKELLGERVVVEPARGIDRSADRYR 408
EL G+ V V+ A D + + R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192
Score = 35.1 bits (77), Expect = 0.036
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 312
+M ++++GG+ + E L +F FG + + +I G+GFV F D A+
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 313 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 492
V K ++ + +VE + + R D H P+ ++ ++
Sbjct: 62 RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108
Query: 493 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE 600
V L+S ++ + K Y Q G +T HR +
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQ 144
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +1
Query: 181 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 336
V L R+ DL + F+ FG ++DI + G+GF++F D DA +A ++++G
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
Query: 337 KELLGERVVVEPARGIDRSADRYRRGDR 420
LLG + V A + R DR
Sbjct: 101 YLLLGRELTVVFAEENRKKPTEMRTRDR 128
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
+++VGGL E + + +F+ FGR D+++ + G+GFV + D D+ + V +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 328 LNGKELLGERVVVEPA 375
N EL +RV V+ A
Sbjct: 180 SNFHELSDKRVEVKRA 195
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAV 321
GS VY+GG+P E DL+ F G + ++ I GY FV F A +A+
Sbjct: 91 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAI 150
Query: 322 YELNGKELLGERV 360
LN + G+R+
Sbjct: 151 DTLNNTDFRGKRI 163
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 342
VYVG + V E L++ F G + + K+ YGFV + D R A A+ LNG+
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 343 LLGERVVVEPARGIDRSAD 399
L G+ + V A + D
Sbjct: 121 LFGQPIKVNWAYATGQRED 139
Score = 34.7 bits (76), Expect = 0.048
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
++VG L V + L + F F D + G+GFV F + +DA A+ E+
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 331 NGKELLGERV 360
NGK L ++
Sbjct: 206 NGKWLSSRQI 215
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADDAVYEL 330
R+YVG L + E DL K F+ FG + + + G+GFV+F DA +A+ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 331 NGK-ELLGERVVV 366
NG+ E+ G + V
Sbjct: 345 NGQLEIAGRAIKV 357
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +1
Query: 208 ERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYELNGKELLGERVV 363
ERD+ +FF G++RD+ I G G+VEF D A+ L+G+ LLG+ V+
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVM 253
Query: 364 VEPA 375
V+P+
Sbjct: 254 VKPS 257
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
R+YVG LP+ V LE+ F G++ D + G+GFV+ + + + A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 328 LNGKELLGERVVVEPA 375
L+G+ L G + V A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
++++VG LP+ V + L F+ G + RD G+GFV +A+ AV
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 325 ELNGKELLGERVVVEPA 375
+ N E+ G R+ V A
Sbjct: 173 KFNSFEVNGRRLTVNRA 189
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYE 327
RVYVG LP+ V LE+ F G++ R+ G+GFV D + ++A+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 328 LNGKELLGERVVVEPA 375
L+G+ L G + V A
Sbjct: 305 LDGQNLEGRAIRVNVA 320
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGLP + + + ++F+ +G + D+ I G+GFV F D DA D+V
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLH 169
Query: 328 LNGKELLGERVVVEPA 375
+L G++V V+ A
Sbjct: 170 KTFHDLSGKQVEVKRA 185
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 214 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 378
DL F G I++I K + FVEF D R A+ A+ LN E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 214 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 378
DL F G I++I K + FVEF D R A+ A+ LN E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +1
Query: 217 LEKFFKGFGRIRDIL---IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 378
L + F+ +G I+++ K FVEF D RDA A +NGKE+ G++VV+E +R
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 321
G+ +YV GL V ERDLE F G++ D+ + G+GF+ + DA+ +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 322 YELNGKELLGERVVVE 369
L+ L G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 324
S ++V G V E L+K F FG++ ++ +I N GYG+V F DA AV
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 325 ELNGKELLGERVVVE 369
+NGK G ++V+
Sbjct: 137 AMNGKFFDGRFILVK 151
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
V+ +P ERD+ +FF G++RD+ + G G++EF D A+ L
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228
Query: 331 NGKELLGERVVVEPA 375
+G+ LG+ V+V+P+
Sbjct: 229 SGQLFLGQPVMVKPS 243
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 327
++YVG L F + E L + F+ FG + + + G+GF++F + A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 328 LNGK-ELLGERVVV 366
LNGK E+ G + V
Sbjct: 326 LNGKLEIAGRTIKV 339
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 321
+++VGGLP V E D + +F+ FG D+++ G+GF+ ++ + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 322 --YELNGKELLGERVV 363
+ELNGK + +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184
Score = 34.7 bits (76), Expect = 0.048
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 327
++++GG+ + E L+++F FG I +++K+ G+GFV F D A+ + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 507
K + R +VE + + R D +R P RT ++ V L
Sbjct: 67 ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115
Query: 508 SSRISWQDLKDYMRQAGEVT 567
S ++ D K Y Q G T
Sbjct: 116 PSSVTESDFKTYFEQFGTTT 135
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 321
+++VGGLP V E D + +F+ FG D+++ G+GF+ ++ + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 322 --YELNGKELLGERVV 363
+ELNGK + +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184
Score = 34.7 bits (76), Expect = 0.048
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 327
++++GG+ + E L+++F FG I +++K+ G+GFV F D A+ + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 507
K + R +VE + + R D +R P RT ++ V L
Sbjct: 67 ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115
Query: 508 SSRISWQDLKDYMRQAGEVT 567
S ++ D K Y Q G T
Sbjct: 116 PSSVTESDFKTYFEQFGTTT 135
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Frame = +1
Query: 166 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDA 318
GS+ ++ L F + D+E FFK G + D+ G+G VEF +A A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Query: 319 VYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 498
+ E +G+ LLG + +D + +R RG+R E ++ V
Sbjct: 355 L-EFHGRPLLGREI------RLDIAQERGERGER--PAFTPQSGNFRSGGDGGDEKKIFV 405
Query: 499 ENLSSRISWQDLKDYMRQ 552
+ + +S D+K+ +R+
Sbjct: 406 KGFDASLSEDDIKNTLRE 423
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
S+++VGGL L++ F FG+I D ++ G+GFV ++ A++A+
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 325 ELNGKELLGERVVVEPA 375
+ KEL G + V PA
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 315
+ R++V GL L+ F FG++ D + G+GFV + DA+
Sbjct: 31 LTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
Query: 316 AVYELNGKELLGERVVVEPAR 378
A E+N K L G + V+PAR
Sbjct: 91 AKAEMNAKFLDGWVIFVDPAR 111
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVEFEDYRDADDAVYELNGKELL 348
V+VGGL V + L+ F +G I + I G GFV+F + A++A+ LNG +L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 349 GERV 360
G V
Sbjct: 323 GTTV 326
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA---RGIDRSADRYR 408
GYGFV F D + A+ E+NG + + PA +G+ D Y+
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ 246
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 187 GLPFGVRERDLEKFFKGFGR-IRDILIKN--GYGFVEFEDYRDADDAVYELNGKELLGER 357
GL ++ L + F F R I+D + G+GF+ FE DA A+ LNGK + G
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
Query: 358 VVVEPARGID 387
+ VE A+ ++
Sbjct: 137 IFVETAKEVE 146
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
+G++++VG LP DL +F FG I+D I G+GFV F + AD
Sbjct: 238 IGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV 297
Query: 319 VYELNGKELLGERVVVEPARGIDRS 393
E+ G+ V ++ A +D +
Sbjct: 298 A--RRSHEICGQEVAIDSATPLDEA 320
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDAD 312
K + ++++V L ++ L + F FG+I++ LI++ G+GF+ F+ DA
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
Query: 313 DAVYELNGKELLGERVVVEPARGID 387
A+ L+GK + G + VE A+ +
Sbjct: 63 KALKSLDGKIVDGRLIFVEVAKNAE 87
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 LIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 414
L+ + + EF D RDADDA + L+G++ G R+ VE +RG R S D RG
Sbjct: 11 LLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 63
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYEL 330
+ V G+ +E D+ F FG I+++ + GY +E+E +A A+ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 331 NGKELLGERVVVEPARGIDRS-ADRYRR 411
NG ELL + V V+ A S + YRR
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGESYRR 184
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-----KNGYGFVEFEDYRDADDAVYELNGK 339
+YV LPF + ++ F +G IR I I G FV +ED DA +AV L+G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 340 ELLGERVVV 366
+ ++V
Sbjct: 81 NVANRYLIV 89
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKEL 345
++V L + +L F +G IR++ + +N ++EF D R A A+ LNG E+
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 346 LGERVVVEP 372
G ++ + P
Sbjct: 357 AGRQLKLAP 365
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 330
+Y+G +P G E ++E FF FG ++ + + K G +GF++FED A+ A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 331 NGKELLGERV---VVEP 372
N L+ + V+EP
Sbjct: 122 NDYLLMEHMLKVHVIEP 138
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 268 NGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGD 417
+GYGFV F +A++A+ +LNGKE++G + ++ + RSA GD
Sbjct: 236 SGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSL---RSASESEDGD 282
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGG+P V + + ++FF FG +++ I G+GFV +E D + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 328 LNGKELLGERVVVEPA 375
N EL G +V ++ A
Sbjct: 191 GNRIELSGTQVEIKKA 206
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 331 NGKELLGERVVVEPARGIDRSADRYRR 411
NGK + V + D +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 331 NGKELLGERVVVEPARGIDRSADRYRR 411
NGK + V + D +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 321
G+ +++ +P +++L F+ FG + + +GFV ++ A +A+
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 322 YELNGKELLGERVVVEPAR 378
+NG+ L G+++ V+ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 324
S ++V G V E L+K F FG++ ++ +I N GYG+V F DA AV
Sbjct: 58 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 117
Query: 325 ELNGK 339
+NGK
Sbjct: 118 AMNGK 122
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KN-GYGFVEFEDYRDADDAVY 324
+++VG LP +++ + E+FF+ FG I ++++ KN G+GF+ + + A AV
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV- 224
Query: 325 ELNGKELLGERVVVE 369
E +G E G + V+
Sbjct: 225 EFDGVEFHGRILTVK 239
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 342
VY G + V E L++ F G I + K+ YGFV + D R A A+ LNG+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 343 LLGERVVVEPARGIDRSAD 399
+ G+ + V A + D
Sbjct: 125 IFGQPMKVNWAYATGQRED 143
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGK 339
G+GFV F + +DA A+ E+NGK
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNGK 216
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 342
VY G + V E L++ F G I + K+ YGFV + D R A A+ LNG+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 343 LLGERVVVEPARGIDRSAD 399
+ G+ + V A + D
Sbjct: 125 IFGQPMKVNWAYATGQRED 143
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
++VG L V + L F F D + G+GFV F + +DA A+ E+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 331 NGK 339
NGK
Sbjct: 210 NGK 212
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG--YGFVEFEDYRDADDAVYELNGKELL 348
++VG + V E DL+ F FG + + I G GFV++ + A+ A+ LNG +L
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 349 GERV 360
G+ +
Sbjct: 340 GQSI 343
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKG-FGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 327
V+VG L V + L + FK + ++ + N GYGFV F D + A+ E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 328 LNGK 339
+NG+
Sbjct: 235 MNGQ 238
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGG+P V E +L+ FF +G + + + G+GFV F+ D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 328 LNGKELLGERVVV---EPARGIDRSADRY 405
N ++ +V + EP + ++RS Y
Sbjct: 170 GNMIDMADTQVEIKKAEPKKSLNRSPPSY 198
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDA 318
+ S++ V LPF E L++ F FG I ++ LIK+ GY F++F DA A
Sbjct: 38 LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97
Query: 319 VYELNGKELLGERVVVEPAR 378
+ ++ + G + ++ A+
Sbjct: 98 IETMDRRMYNGRMIYIDIAK 117
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 37.1 bits (82), Expect = 0.009
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRI------RDIL-IKNGYGFVEFEDYRDADD 315
K GS +YV L V + L + F FG I RD + G GFV F +A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382
Query: 316 AVYELNGKELLGERVVVEPA-RGIDRSA 396
A+ E+NGK ++ + + V A R DR A
Sbjct: 383 AITEMNGKMIVTKPLYVALAQRKEDRKA 410
Score = 36.7 bits (81), Expect = 0.012
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 315
K+ + VYV L + + +L K F FG +I G+GFV FE+ DA
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279
Query: 316 AVYELNGK 339
AV LNGK
Sbjct: 280 AVDALNGK 287
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 333
+++ L + + L + F FG I + GYGFV+++ A A+ +LN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 334 GKELLGERVVVEP 372
G L ++V V P
Sbjct: 195 GMLLNDKQVYVGP 207
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 330
+YVG L V + L + F G++ RD+ + GYG+V + +DA A+ EL
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 331 NGKELLGERVVV 366
N L G + V
Sbjct: 107 NFMALNGRAIRV 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 315
M + +YVGGL V E L F FG I+D+ +GFV F + DA
Sbjct: 10 MQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASA 69
Query: 316 AVYELNGKELLGERVVVEPA 375
A+ ++G EL G + V A
Sbjct: 70 AMDNMDGAELYGRVLTVNYA 89
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
+ +Y+G LP + + L F FG I R + GYGFV++ D + A+ AV
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 325 ELNGKELLGERVVVEPA 375
+NG G + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 324
+ +Y+G LP + + L F FG I R + GYGFV++ D + A+ AV
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 325 ELNGKELLGERVVVEPA 375
+NG G + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 348
+ V L V E +L+K F G + + I GYG+V+F+ A++AV + G +++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG-QVI 297
Query: 349 GERVV 363
G++ V
Sbjct: 298 GQQAV 302
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 330
+++G L + V E L F G + + +I+N GYGF+EF + A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 331 NGKELLG 351
NG ++ G
Sbjct: 86 NGTQMPG 92
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--KN-----GYGFVEFEDYRDADDAVYE 327
++++V + F +R+L + F FG+I+ + + KN GY FVEF ++A +A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRR 411
L G +V+E A D S + R+
Sbjct: 729 LASTHFYGRHLVLEWAND-DNSMEAIRK 755
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 366
+ +GYGFVEF+ A +L G L G +++
Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALIL 647
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI 258
R++V LP+ E +L + F FG+I ++
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEV 290
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
R+YVG LP+ + +L + F G + D+ I G+GFV +A +A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 328 LNGKELLGERVVV 366
N ++ G V V
Sbjct: 177 FNSSQIGGRTVKV 189
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLG 351
G+GF+ FE + A+ +NG E+ G
Sbjct: 261 GFGFISFESAENVQSALATMNGVEVEG 287
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGGLP + + +F+ +G + D +I G+GFV F D D+ D V
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLH 169
Query: 328 LNGKELLGERVVVEPA 375
+L G++V V+ A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFED 297
++++GG+ + E L ++F FG + + + G+GFV F D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 333
++V L V + L + F G G I + GYGFV+F+ A +A+ +LN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 334 GKELLGERVVVEP 372
GK L +++ V P
Sbjct: 196 GKVLNDKQIFVGP 208
Score = 35.5 bits (78), Expect = 0.027
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADD 315
KM + VYV L + +L+ F +G I +++++G +GFV FE+ DA
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAAR 280
Query: 316 AVYELNGKE 342
AV LNGK+
Sbjct: 281 AVEALNGKK 289
Score = 31.9 bits (69), Expect = 0.34
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 315
K G +YV L V + L + F FG I + G GFV F +A
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383
Query: 316 AVYELNGKELLGERVVVEPAR 378
+ E+NGK + G+ + V A+
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQ 404
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 330
+YVG L F V + L +F ++ RD GYG+V + + DA+ A+ +L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 331 NGKELLGERV 360
N L G+ +
Sbjct: 108 NYSYLNGKMI 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 36.7 bits (81), Expect = 0.012
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN--GYGFVEFEDYRDADD 315
VG+ +++G L V E+ L F FG I RD N G+GF+ ++ + +D
Sbjct: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
Query: 316 AVYELNGKELLGERVVVEPARGIDRSADRY 405
A+ + G+ L ++ V A D +R+
Sbjct: 170 AIESMTGQYLSNRQITVSYAYKKDTKGERH 199
Score = 35.9 bits (79), Expect = 0.021
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYEL 330
VYVGGL + E L + F G + ++ + YGF+E+ DAD A+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 331 NGKELLGERVVVEPARGIDRSAD 399
N +L G+ + V A +S D
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLD 109
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.7 bits (81), Expect = 0.012
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL-------IKNGYGFVEFEDYRDADDAVY 324
G +YV L V LE+ F FG I I G GFVEF +A A+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 325 ELNGKELLGERVVVEPAR 378
++NGK + + + V A+
Sbjct: 282 KMNGKMVGNKPIYVSLAQ 299
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADDAV 321
V + VYV L + DL++ F FG I +++K+G +GFV FE A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 322 YELNG 336
++NG
Sbjct: 177 EKMNG 181
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 35.9 bits (79), Expect = 0.021
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 181 VGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKELLG 351
V L + ++L + K +G +++I + N ++EF D R A A+ LNG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 352 ERVVVEP 372
+++ + P
Sbjct: 366 KKLQLVP 372
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 35.9 bits (79), Expect = 0.021
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRD----ILIKNG----YGFVEFEDYRDADDAV 321
G+ +YV LPF LE FK FG I + ++ + G YGFVEFE+ DA
Sbjct: 318 GTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEE-ADAAHRA 376
Query: 322 YELNGKELLGERVVVE 369
E + ++ G R VE
Sbjct: 377 IEASPVKIGGLRAFVE 392
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.9 bits (79), Expect = 0.021
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 321
VYV LP + ++E+ FK FG I+ + ++ Y FVEFED ++A+
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 322 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 414
L G+++ E PA RG R R R G
Sbjct: 319 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 353
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.9 bits (79), Expect = 0.021
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 321
VYV LP + ++E+ FK FG I+ + ++ Y FVEFED ++A+
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 322 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 414
L G+++ E PA RG R R R G
Sbjct: 378 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 412
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 35.9 bits (79), Expect = 0.021
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 327
+ VYV L + DL+ F +G+I ++ G+GFV FE+ DA AV
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 328 LNG 336
LNG
Sbjct: 89 LNG 91
Score = 31.1 bits (67), Expect = 0.59
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +1
Query: 157 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 315
K S +YV L + + L++ F FG + + G GFV F +A +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 187
Query: 316 AVYELNGKELLGERVVVEPAR 378
A+ +L+GK + + + V A+
Sbjct: 188 AMSQLSGKMIESKPLYVAIAQ 208
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.9 bits (79), Expect = 0.021
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +1
Query: 127 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 285
FE I + K+ GS +Y+ L V + L++ F +G + + G+GFV
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373
Query: 286 EFEDYRDADDAVYELNGKELLGER 357
+ + +A A+ E+NGK ++G +
Sbjct: 374 AYSNPEEALLAMKEMNGK-MIGRK 396
Score = 33.9 bits (74), Expect = 0.083
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN-GYGFVEFEDYRDADDAVYELN 333
V++ L + + L + F FG I D++ ++ GYGFV+FE A A+ +LN
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 334 GKELLGERVVV 366
G L ++V V
Sbjct: 194 GMLLNDKQVFV 204
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 327
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 328 LNGKELLGERVVVEPA 375
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 327
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 328 LNGKELLGERVVVEPA 375
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 327
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 328 LNGKELLGERVVVEPA 375
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKG-FGRI--RDILI------KNGYGFVEFEDYRDADDAVYE 327
++V L F R + L++FF G + +++ +GYGFV F+ + A+ A+ E
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 328 LNGKELLGERV 360
GK+ LG +
Sbjct: 251 FQGKDFLGRPI 261
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 324
++V+VGGL + ++ ++F+ FG I + +I KN GYGFV F + A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 325 ELN 333
+ N
Sbjct: 77 DPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 324
++V+VGGL + ++ ++F+ FG I + +I KN GYGFV F + A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 325 ELN 333
+ N
Sbjct: 77 DPN 79
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 202 VRERDLEKFFKGFG---RIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
V L F+ +G ++R+ K FVEF D RDA A+ +NGK + G+ +V++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 373 AR 378
+R
Sbjct: 254 SR 255
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.5 bits (78), Expect = 0.027
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 327
R++VGGLP+ E + + + FG +R L+K+ GY F ++D D A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 328 LNGKELLGERVVVEPA 375
LNG ++ + + V A
Sbjct: 436 LNGIKMGDKTLTVRRA 451
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
++V+VGGL + ++ ++F FG I + +I GYGFV F D A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 325 ELN 333
+ N
Sbjct: 77 DPN 79
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 35.1 bits (77), Expect = 0.036
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVY--ELNGKELL 348
++VGG+ V + DLE+ F FG+I D F DY + DDA+ +NGK +
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQAKSMNGKPMG 310
Query: 349 GERVVVE 369
G + V+
Sbjct: 311 GSFLRVD 317
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAV 321
+ ++VG L E DL + F +G I I + + GF F YR ++AV
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFA-FIYYRHVEEAV 67
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.048
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
++V L + E +++ F+ +G I+ + + GY F+E+ RD A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 331 NGKELLGERVVVEPARG 381
+G+++ G RV+V+ RG
Sbjct: 200 DGQKIDGRRVLVDVERG 216
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.7 bits (76), Expect = 0.048
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDY 300
++++VG L + DL ++F+ FG++ D + GYGF+ F DY
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.7 bits (76), Expect = 0.048
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRI---RDILIK-----NGYGFVEFEDYRDADDAVY 324
+++YV GL F E L F+ FG + ++ K G+ F+ +E +A A+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 325 ELNGKELLGERVVVEPAR 378
++GK L G + VE A+
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.7 bits (76), Expect = 0.048
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNG----YGFVEFEDYRDADDAVYE 327
+ VYV LP + E +L K F FG I ++ ++G +GFV FE A AV +
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRR 411
+NG L + + V A+ + RR
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRR 316
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +1
Query: 127 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 285
FE I + K G+ +Y+ L V + L++ F +G + + G+GFV
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFV 377
Query: 286 EFEDYRDADDAVYELNGKELLGER 357
+ + +A A+ E+NGK ++G +
Sbjct: 378 AYSNPEEALRALSEMNGK-MIGRK 400
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 333
+++ L + + L + F FG I + GYGFV+FE A A+ +LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 334 GKELLGERVVV 366
G + ++V V
Sbjct: 198 GMLMNDKQVFV 208
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.048
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 331 NGKELLGERVVVEPARGIDRSADRYRR 411
NG+ ++ V + D +R R
Sbjct: 170 NGRHIMEGANVPLIVKWADTEKERQAR 196
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 321
G+ +++ +P +++L F+ FG++ I +GF+ ++ A +A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 322 YELNGKELLGERVVVEPAR 378
+NG +L G+++ V+ R
Sbjct: 398 NTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.048
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 331 NGKELLGERVVVEPARGIDRSADRYRR 411
NG+ ++ V + D +R R
Sbjct: 161 NGRHIMEGANVPLIVKWADTEKERQAR 187
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 321
G+ +++ +P +++L F+ FG++ I +GF+ ++ A +A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 322 YELNGKELLGERVVVEPAR 378
+NG +L G+++ V+ R
Sbjct: 389 NTMNGCQLSGKKLKVQLKR 407
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 202 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
V +L + F +G IR+I + + F+E+ D RDA+ A+ LN E+ G+ + +E
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 373 AR 378
+R
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 202 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
V +L + F +G IR+I + + F+E+ D RDA+ A+ LN E+ G+ + +E
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 373 AR 378
+R
Sbjct: 354 SR 355
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 34.3 bits (75), Expect = 0.063
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-KN-------GYGFVEFEDYRDADDAVYE 327
++ + LPF + D++ F G + D+ I KN G+ FV+F +DA +A+ +
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 328 LNGKELLGERVV 363
NG + G+R +
Sbjct: 392 FNG-HMFGKRPI 402
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 33.9 bits (74), Expect = 0.083
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-----YGFVEFE 294
G +YV LPF LE+ FK FG I+ I +++ +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFE 341
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.9 bits (74), Expect = 0.083
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNGY----GFVEFEDYRDADDAVYELN 333
+YV LP + D+ FFK G++ + + +NG GFVEF +A A+ N
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Query: 334 GKELLGERVVV 366
G+ L G ++++
Sbjct: 626 GEYLCGNKLIL 636
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.083
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 324
++++VGGL + + + ++F+ FG I + ++ KN GYGFV F++ A A
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 325 ELN 333
+N
Sbjct: 82 NMN 84
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.083
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 333
V+V LP V L+ FK FG I + GYGFV+FE A A+ LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 334 GKELLGERVVV 366
+ + + V
Sbjct: 174 STIVADKEIYV 184
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 327
S +YV + V E +L K F G I + G+GFV F +A DAV
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 328 LNGKELLGERVVVEPAR 378
+G+ G+ + V A+
Sbjct: 364 FHGQMFHGKPLYVAIAQ 380
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYE 327
+ +Y+ L V E L + F FG+I + I GY FV F++ DA A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 328 LNG 336
+NG
Sbjct: 261 VNG 263
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 208 ERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 375
E D+ +F +G + D+ I K YGFV F + + N + RV+V+P
Sbjct: 331 EHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPY 390
Query: 376 RGIDRSADRY 405
R RS+ RY
Sbjct: 391 REKSRSS-RY 399
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG------YGFVEFE 294
G +YV LPF LE+ FK FG I+ I +++ +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFE 342
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.1 bits (72), Expect = 0.15
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEF--EDYRD---AD 312
+++VGGLP + E +L+ +F +G I + I G+GFV F ED D +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 313 DAVYELNGKELLGERVVVEPAR-GIDRSADRY 405
V+EL K++ +R EP R G D S Y
Sbjct: 218 GKVHELGDKQVEIKR--AEPKRTGRDNSFRSY 247
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
RVY+G +P V L K + G + + + +GF + DA+ V +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 328 LNGKELLGERVVV 366
LNG + G + V
Sbjct: 137 LNGNTVEGREIKV 149
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 330
V V L RE DL + F FG + + + G+GFV F DA A+ +L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 331 NG 336
NG
Sbjct: 275 NG 276
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
S +YV L F + D+ F FG++ + + G FV + DA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 325 ELNGKELLGERVVVEPARGIDRSAD 399
++ K L G ++ V A R+++
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASE 141
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 330
++V L V E L++ F FG + R + + G+G+VEF+ DA+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 331 NGKELLGERV 360
+G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 330
++V L V E L++ F FG + R + + G+G+VEF+ DA+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 331 NGKELLGERV 360
+G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.19
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYE 327
+VYVG LP+ + L F FG I + K G + F+ F + DA
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER-DAALS 271
Query: 328 LNGKELLGERVVVEPARGIDRS 393
NG + G R++V GI++S
Sbjct: 272 FNGTQYEGRRIIVR--EGIEKS 291
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG L E+++E+ F FG + D+ + G GFV++ A A+ L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 331 NG 336
NG
Sbjct: 272 NG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 330
+++VG L E+++E+ F FG + D+ + G GFV++ A A+ L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 331 NG 336
NG
Sbjct: 272 NG 273
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.3 bits (70), Expect = 0.25
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 327
S +YV L + E L + F +G+I + G+GFV F + ++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 328 LNGKELLGERVVVEPARGIDRSADRYRR 411
LNG + G+ +VV A +R DR +R
Sbjct: 364 LNGFLVDGKPIVVRVA---ERKEDRIKR 388
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAVYEL 330
+ +YV L + LE+ F FG I + G+GFV+F+ + A A L
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 331 NGKELLGERVVV 366
+G + G+++ V
Sbjct: 172 HGSMVYGKKLFV 183
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 321
G+ +YV GL V ++DLE F G++ + G+ FV +DA+ +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 322 YELNGKELLG 351
LN L G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 166 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 321
G+ +YV GL V ++DLE F G++ + G+ FV +DA+ +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 322 YELNGKELLG 351
LN L G
Sbjct: 130 KYLNQSVLEG 139
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 262 IKNGYGFVEFEDYRDADDAVYELNG 336
+ GYGFVEFE + AD + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 375
GYGFV F D + A+ E+NG + + + PA
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 274
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VGG+P V E +L+ FF +G + + + G+GFV F+ D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 328 LN 333
N
Sbjct: 170 GN 171
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 348
+YVGGL V E+D+ F G I IL + FV + A+ A EL+ + ++
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 349 -GERV 360
G+R+
Sbjct: 290 NGQRL 294
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.5 bits (68), Expect = 0.44
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 333
++V L ++ D+ FFK G + + LI N G+GFVEF +A+ A+ + N
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVK-N 307
Query: 334 GKELLGERVVVEPAR 378
G+ L ++ ++ A+
Sbjct: 308 GEYLHNYKISLDGAK 322
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = +1
Query: 217 LEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELNGKELLGERVVV 366
++ FF G ++ + L+ N GYGFVEF A+ A+ E NG+ L ++++
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILL 230
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 348
+YVGGL + E+D+ F G I IL FV + A+ A EL+ + ++
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 349 -GERV 360
G+R+
Sbjct: 290 NGQRL 294
>At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 363
Score = 31.1 bits (67), Expect = 0.59
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 183 WWSPLWSKRERLGKVLQRFWKNQRHTYQE 269
WW+ + R R+GKVL FW+ + +++
Sbjct: 327 WWNQTKTTRARIGKVLIHFWEKLKKKFKD 355
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 31.1 bits (67), Expect = 0.59
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 154 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 249
W++ G +++ G+P ++ +DLEK K +G++
Sbjct: 117 WEVKGGFLFMPGVPEAIQRQDLEKVAKTYGKV 148
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.7 bits (66), Expect = 0.78
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 345
+++ LP L+ F+ GF IR I K G FVE+ED A A+ L G ++
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKI 219
Query: 346 LGERVVV 366
+ +V
Sbjct: 220 TPQNPMV 226
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++V GLP+ L F+G+G I + + G+GFV F+ + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++V GLP+ L F+G+G I + + G+GFV F+ + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +1
Query: 163 VGSRVYVGGLPFGVRERDLEKFFKGFGR--------IRDILIKNGYGFVEFEDYRDADDA 318
V +++Y G LP+ V L + + F RD G+ FV + D +
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 319 VYELNGKELLGERVVV 366
+ L+G E LG + V
Sbjct: 143 IDNLDGTEYLGRALKV 158
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +1
Query: 172 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 327
+++VG L + V L F+ G + + GYGFV + + + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 328 LNGKELLGERVVVEPARG 381
L+G EL G + V A+G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 208 ERDLEKFFKGFGRI--RDIL--IKNG----YGFVEFEDYRDADDAVYELNGKELLGERVV 363
+ DL F FG + D++ K G Y F+EFE+ + A ++++ + R+
Sbjct: 256 DEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIH 315
Query: 364 VEPARGIDRSADRYRRGD 417
V+ ++ + + ++R+ D
Sbjct: 316 VDFSQSVSKLWSQFRQKD 333
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 345
+++ LP L+ F+ GF IR I K G FVE+ED + A+ L G ++
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 215
Query: 346 LGERVVV 366
+ +V
Sbjct: 216 TPQNPMV 222
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 345
+++ LP L+ F+ GF IR I K G FVE+ED + A+ L G ++
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 216
Query: 346 LGERVVV 366
+ +V
Sbjct: 217 TPQNPMV 223
>At2g31985.1 68415.m03909 expressed protein
Length = 241
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 154 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 249
W++ G +++ G+P ++ +DL+K K +G++
Sbjct: 117 WEVKGGFLFMPGVPGAIQRKDLDKVAKTYGKV 148
>At1g79975.2 68414.m09353 expressed protein
Length = 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 99 KIVDYLLVQL*IIVYYCLLENGWITSVCWW 188
K +D+ I +++C++ GW +S+ WW
Sbjct: 88 KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117
>At1g79975.1 68414.m09352 expressed protein
Length = 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 99 KIVDYLLVQL*IIVYYCLLENGWITSVCWW 188
K +D+ I +++C++ GW +S+ WW
Sbjct: 88 KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 276
+R+Y+ LP V +L+ F G G++ I K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 276
+R+Y+ LP V +L+ F G G++ I K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 324
+ ++V GL L F FG + D + G+GFV + D+ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 325 ELNGKELLGERVVVEPARGIDRS 393
++GK L G + E AR ++S
Sbjct: 116 GMDGKFLDGWVIFAEYARPREQS 138
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 318
+++YV GLP+ R L +F+ FG I + G+GFV F + A A
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFF---KGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 345
++V LP L+ F +GF +R I K G FVEF D + A+ L G ++
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI 238
Query: 346 LGERVVVEPAR 378
++++ A+
Sbjct: 239 QQNQMLITYAK 249
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 330
++VG L E L + +GRI+++ L+++ GYGFVE+E ++ A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 331 NGKELLGERVVVE 369
+ + G ++V+
Sbjct: 126 HHSLIDGREIIVD 138
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 330
V V L R DL + F+ FG + + + G+GFV F DA A+ +L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 331 NG 336
NG
Sbjct: 236 NG 237
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-----RDILIKNGYGFVEFEDYRDADDAVY 324
M + V V + G +RDL++FF G I + + +V F+D + A+ AV
Sbjct: 1 MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60
Query: 325 ELNGKELLGERVVVEPA 375
L+G ++ V+V A
Sbjct: 61 -LSGATIVDSSVIVSMA 76
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 187 GLPFGVRERDLEKFFKGFGRIRDI--LIKNGYG------FVEFEDYRDADDAVYELNGKE 342
GLPF + D+ FFK F D + NG G FVEF + D+ A+ + ++
Sbjct: 268 GLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAM--VKDRK 325
Query: 343 LLGERVVVEPARGIDRSADRYRRG 414
LG R + ++ + RG
Sbjct: 326 TLGSRYIELFPSSVEELEEALSRG 349
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +1
Query: 217 LEKFFKGFGRIRDILIKNGY--------GFVEFEDYRDADDAVYELNGKELLGERVVVEP 372
LEK F G IR + + Y F+ E A+D +L+G +++G V+V+P
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 373 A 375
+
Sbjct: 192 S 192
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKG-------FGRIRDILIKNGYGFVEFED 297
+RVY+G L + ERD+ K F G+ ++ GY V+F+D
Sbjct: 262 NRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKD 311
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 160 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 249
+V +++YVGG+P+ E ++ +F+ G I
Sbjct: 158 VVPNKLYVGGIPYQSTEDEIRSYFRSCGVI 187
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Frame = +1
Query: 169 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDA----D 312
++V+VGGL + + + F +G I + +I GYGFV F+D + A +
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Query: 313 DAVYELNGK 339
D+ +NG+
Sbjct: 77 DSTPIINGR 85
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +1
Query: 178 YVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYELN 333
+V GL E+DL F FG + RD +GFV FE+ + DA+ ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 334 GKE 342
+E
Sbjct: 70 VEE 72
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKN----GYGFVEFEDYRDADDAV 321
+ V LP +E FK FG IR + ++N YGFVEF++ A A+
Sbjct: 1078 ICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA---RGIDRSADRYR 408
GYGFV F D + A+ E+NG + + PA +G+ D Y+
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ 246
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 175 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 270
V+VG LP V+++ + K F FG + + I++
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRS 204
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 155 GKWLDHECMLVVSPLE*ERETW 220
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 155 GKWLDHECMLVVSPLE*ERETW 220
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 155 GKWLDHECMLVVSPLE*ERETW 220
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 155 GKWLDHECMLVVSPLE*ERETW 220
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 271 GYGFVEFEDYRDADDAVYELNGKELLGERVV 363
GYGFV F + D A+ E+NGK +G R +
Sbjct: 179 GYGFVSFLNPADLAAALKEMNGK-YVGNRPI 208
>At1g17430.1 68414.m02130 hydrolase, alpha/beta fold family protein
low similarity to SP|Q02104 Lipase 1 precursor (EC
3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
immobilis}, contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 332
Score = 27.1 bits (57), Expect = 9.6
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -3
Query: 306 ISVIFKFNKTISILDKYVSDSSKTFEELFQVSLSYSKGETTNIHS*SNHFPINNNKL*FK 127
IS F F I I D ++S F +L V++ GETT S H I+ L
Sbjct: 25 ISCFFDFPILIKIADSFLSLYFLVFCDLRPVTVDLDDGETTVHFWISGHRRISRQNLVML 84
Query: 126 VELASNRR--FYHSISK-SKS 73
N + F H +S SKS
Sbjct: 85 HGYGGNSKWQFVHQVSDLSKS 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,252,249
Number of Sequences: 28952
Number of extensions: 201919
Number of successful extensions: 982
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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