Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j23
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)             120   7e-28
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   8e-22
SB_38574| Best HMM Match : WW (HMM E-Value=4.9)                        28   6.8  
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)                27   9.0  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          27   9.0  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score =  120 bits (290), Expect = 7e-28
 Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
 Frame = +2

Query: 146 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETH 322
           ++ + +V I+GSGNWGS IA+IVG+N    ++ F + V M+ YEE+++G KLTEIIN  H
Sbjct: 3   EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIINTKH 62

Query: 323 ENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ 436
            NVKYLP   +P N+ A PDVVE  KDAD+L+FVVPHQ
Sbjct: 63  MNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQ 100


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score =  100 bits (240), Expect = 8e-22
 Identities = 61/151 (40%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
 Frame = +2

Query: 161 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVKY 337
           KV ++GSGNWG+AIA+I+G N     + F ++V M+VY+ +I G+KL+EIIN  HENVK 
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIINTEHENVKD 288

Query: 338 LPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 517
           LPG K+P NV                       F+ ++C  +   IKP   A+SLIKG D
Sbjct: 289 LPGFKIPPNV-----------------------FLDSVCQKIKSSIKPDVLAISLIKGLD 325

Query: 518 IAEGGGIDLISHIITRCLKIP-CAVLMGANI 607
             +  G+ L+S+ I   L +   +V+MGAN+
Sbjct: 326 HRK-KGLHLVSNQIKESLGLQHVSVMMGANL 355


>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
          Length = 256

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 431 HQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLIS 550
           H+     C   + +IKP      +IKGF I    G +L S
Sbjct: 191 HERRNIACQRFVSRIKPENPLFPIIKGFHITHDSGYNLRS 230


>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
          Length = 792

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 125 NILDMADKQPKNKVCIVGSGNWGSAIAKIV 214
           +++DMAD+  K   C+  SGN  + I  I+
Sbjct: 348 DLIDMADRYNKTPFCLAKSGNADNTIISIL 377


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 514 KSLNQRQSSCSWLYFSKQSRADSSDKLMRHHKY*KISIFCSFNYIWNSN 368
           KS N     C W Y ++  R   +  + R H+  KI IF   N++W  N
Sbjct: 217 KSHNYTIFLCLWGY-ARGLRPRLAPLIYRRHQNRKIFIFHEGNFVWQPN 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,235
Number of Sequences: 59808
Number of extensions: 287218
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)