Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j23
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD...   169   1e-42
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy...    74   9e-14
At5g63910.1 68418.m08025 expressed protein                             33   0.20 
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.79 
At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.79 
At2g17420.1 68415.m02010 thioredoxin reductase 2 / NADPH-depende...    29   2.4  
At5g07800.1 68418.m00894 flavin-containing monooxygenase family ...    27   7.4  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   7.4  

>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
           / GPDH strong similarity to  SP|P52425
           Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
           {Cuphea lanceolata}; contains Pfam profile PF01210:
           NAD-dependent glycerol-3-phosphate dehydrogenase
          Length = 400

 Score =  169 bits (411), Expect = 1e-42
 Identities = 82/152 (53%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
 Frame = +2

Query: 155 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII-EGKKLTEIINETHENV 331
           K+KV +VGSGNWGS  AK++  NA  L +F D V MWV+EE++  G+KL ++IN+T+ENV
Sbjct: 54  KSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVLPNGEKLNDVINKTNENV 113

Query: 332 KYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKG 511
           KYLPG KL  NVVA PD+  A KDA++L+FV PHQF+  IC  L GKI     A+SL+KG
Sbjct: 114 KYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDGKITGDVEAISLVKG 173

Query: 512 FDIAEGGGIDLISHIITRCLKIPCAVLMGANI 607
            ++ + G   +IS +I++ L I C VLMGANI
Sbjct: 174 MEVKKEGPC-MISSLISKQLGINCCVLMGANI 204


>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
           dehydrogenase family protein low similarity to SP|Q26756
           Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
           (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
           Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
           dehydrogenase
          Length = 420

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 48/140 (34%), Positives = 68/140 (48%)
 Frame = +2

Query: 161 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 340
           KV ++G G++G+A+A  V R    L      V M V +  +      + INE H N KY 
Sbjct: 89  KVVVLGGGSFGTAMAAHVARRKEGLE-----VNMLVRDSFV-----CQSINENHHNCKYF 138

Query: 341 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 520
           P HKLP NV+A  D   A  DAD  +  VP QF  +    +   + P    +SL KG ++
Sbjct: 139 PEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLEL 198

Query: 521 AEGGGIDLISHIITRCLKIP 580
                + ++S II   LK P
Sbjct: 199 ---NTLRMMSQIIPIALKNP 215


>At5g63910.1 68418.m08025 expressed protein
          Length = 500

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 164 VCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLT-EIINETHE 325
           VCIVGSG  GS++A  +   + S    + ++ M+   EI+ G+  T  +  +T E
Sbjct: 38  VCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFE 92


>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +2

Query: 119 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKL 298
           D  +LD  ++QP   V  +  G+ G   AK +   A  L   + R  +WV    ++G   
Sbjct: 250 DHPVLDWLNEQPNESVLYISFGSGGCLSAKQLTELAWGLEQSQQRF-VWVVRPPVDGSCC 308

Query: 299 TEIINE----THENV-KYLP 343
           +E ++     T +N  +YLP
Sbjct: 309 SEYVSANGGGTEDNTPEYLP 328


>At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 487

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +2

Query: 128 ILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEI 307
           +LD  +KQP   V  +  G+ GS  AK +   A  L   + R  +WV    ++G   +  
Sbjct: 258 VLDWLNKQPDESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF-VWVVRPPVDGSACSAY 316

Query: 308 INETHENVKYLPGHKLPSNVVA 373
           ++     ++      LP   V+
Sbjct: 317 LSANSGKIRDGTPDYLPEGFVS 338


>At2g17420.1 68415.m02010 thioredoxin reductase 2 / NADPH-dependent
           thioredoxin reductase 2 (NTR2) identical to SP|Q39242
          Length = 330

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = +2

Query: 155 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 334
           K KVCIVGSG      A    R       FE     W+  +I  G +LT     T  +V+
Sbjct: 5   KTKVCIVGSGPAAHTAAIYASRAELKPLLFEG----WMANDIAPGGQLT-----TTTDVE 55

Query: 335 YLPGHKLPSNVVAVPDVVE 391
             PG   P  ++ + D+VE
Sbjct: 56  NFPG--FPEGILGI-DIVE 71


>At5g07800.1 68418.m00894 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 460

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 140 ADKQPKNKVCIVGSGNWGSAIAKIV---GRNAASLSNFEDRVTMWVYEEIIE 286
           A +    KVC++G+G  G   A+ +   G     L   ED    W Y+  +E
Sbjct: 8   ASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVE 59


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 482  TAAALSLIKGFDIAEGGGIDLISHIITRCL 571
            T AA SL  G ++   GG+ L+S +++RC+
Sbjct: 1652 TCAASSL-NGEELVRDGGVQLLSTLLSRCM 1680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,872
Number of Sequences: 28952
Number of extensions: 206971
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)