Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j22
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   0.75 
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   9.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.2  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -1

Query: 456 CPEYDLFFQIRTSHLHDAVADFIALRQRLVRGVGNCVHSQACYVALPYREAVVDRVVVQE 277
           CP  DL   I   H      DF  + ++++RG+ N +HSQ     + +R+   + +++ E
Sbjct: 540 CPRGDLLSLIEDRHDRLGKKDFECMIKQILRGL-NYIHSQ----GIAHRDIKPENILISE 594

Query: 276 H 274
           +
Sbjct: 595 Y 595


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 313 IWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLK 435
           +W   IT  +VD    TT+  LT    +S     V  P+LK
Sbjct: 2   VWHSHITRTQVDDFPTTTNFFLTNILSMSVVFRTVEDPELK 42


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 280 LHDDAINDRLAIWQGDITSLRVDAITN-TTDETL 378
           L  DAINDRL I+  ++  L + +++    DE L
Sbjct: 298 LERDAINDRLCIFGENLIDLELKSVSQLLIDEVL 331


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 TLTESNEVSDRIMQVAGPDLKEEIIL-RAHECPHRRGGGDAGVRSAVPARHP 525
           TLT  ++  D +  V+  DL+E I+L R    P     G A   + + + HP
Sbjct: 614 TLTYIDDEGDVVELVSDSDLREAILLARRRGLPRLEVRGVAAFTNHLESSHP 665


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 526 VDDVPALQTEPRRHHHLAGAGTHVP 452
           +DD+P + +E R   H   A  H+P
Sbjct: 707 LDDIPKVISEQRNREHRPNAFRHMP 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,278
Number of Sequences: 5004
Number of extensions: 31133
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)