Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j22
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 44 6e-05
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 33 0.11
10_01_0268 + 2864524-2864871 30 1.0
03_02_0748 + 10896467-10897447 29 3.1
06_03_0029 - 15673494-15673871,15674193-15674375,15674425-156744... 28 4.0
01_01_0065 + 511840-512502 28 4.0
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 28 4.0
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 28 5.3
12_02_0088 + 13475547-13476705,13477801-13477931 27 7.1
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 27 7.1
11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222... 27 9.3
07_03_0132 - 14011468-14012124 27 9.3
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412... 27 9.3
05_01_0478 - 3910575-3912989 27 9.3
05_01_0475 - 3818121-3820565 27 9.3
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 27 9.3
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 286 DDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEE 441
D IN ++ +W+G +L VDA+ N+T+E L E++ S + AGP L EE
Sbjct: 92 DHEINSKICLWRGHPWNLEVDAVVNSTNENLDEAHS-SPGLHAAAGPGLAEE 142
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 286 DDAINDRLAIWQGDITSLRVDAITNTTDE 372
D IN R+ +W+G +L VDA+ N+T+E
Sbjct: 86 DHEINSRIYLWRGHPWNLEVDAVVNSTNE 114
>10_01_0268 + 2864524-2864871
Length = 115
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 61 CTS-KLRRCVCVCGSL*SKSLT*NINLENSAKDSSVCGMRAPGEC 192
CTS K CVC L S + NIN++ + CG+ PG C
Sbjct: 60 CTSMKGVNVPCVCTYLGSPGVRDNINMDKVFYVTKQCGIAIPGNC 104
>03_02_0748 + 10896467-10897447
Length = 326
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 445 ILRAHECPHRRGGGDAGVRSAVPARHP 525
++ A + RRGGG AG R AVP P
Sbjct: 273 VIVARKADPRRGGGLAGARGAVPVVSP 299
>06_03_0029 -
15673494-15673871,15674193-15674375,15674425-15674478,
15674592-15674756,15676478-15676720,15676810-15676896,
15676995-15677225
Length = 446
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 214 QTVAPPPADYSNCTPLHAQPVFLH 285
+T+ P D +C P H QP F H
Sbjct: 74 KTIQSPDGDLIDCVPSHLQPAFDH 97
>01_01_0065 + 511840-512502
Length = 220
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 328 ITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEIILRAHECPH 471
+T DA ++T D L I++VA PDL L AH+C H
Sbjct: 35 VTISASDAYSHTLD-ALHALRSAYANIVEVAPPDLAAAEALLAHDCNH 81
>01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 319 QGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEIILRAHE---CPHRRG-GG 486
QG +++ DAI N D+ + ++ Q A L++ +LR+HE P G G
Sbjct: 1116 QGIHSAINHDAIMNANDDQKLRLEAEATQVAQRAAEALRQSRMLRSHESFSVPTWTGRAG 1175
Query: 487 DAGVRSAV 510
AG S+V
Sbjct: 1176 AAGAPSSV 1183
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 163 VCGMRAPGECWSVPRWSQTVAPPPADYSNCTPLHAQPVFL 282
+ M P +CW R PPP S+ +P+ P L
Sbjct: 1 MAAMATPQQCWLPTRARAPPPPPPRAPSSASPVSGAPASL 40
>12_02_0088 + 13475547-13476705,13477801-13477931
Length = 429
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 190 CWSVPRWSQTVAPPPADYSNCTPLHAQPVFLHDDAIN 300
C RWS A PPA+ C P AQ DD +N
Sbjct: 364 CSDNGRWSG--AQPPAEVELCFPEQAQKCLSADDILN 398
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 332 VMSPCHIARRSLIASSCRNTGWACSGVQLE*SAGGGATV---CDQ 207
+ SPC A L++ SC +TG SGV GG ++ CDQ
Sbjct: 191 IQSPCCCANVPLVSVSCCSTG-QTSGVSSCMQPSGGCSISLTCDQ 234
>11_04_0471 -
18121023-18121213,18121954-18122080,18122221-18122253,
18122969-18123009,18123415-18123484,18123626-18123744,
18123876-18123942,18124735-18124809,18125023-18125050,
18125130-18125179,18125679-18125741,18125829-18125870,
18126000-18126078,18127233-18127368,18128013-18128517,
18129238-18129372
Length = 586
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 385 SNEVSDRIMQVAGPDLKEEIILRAHECPHRR-GGGDAGVRSAVP 513
S+ + R++Q P + E + R RR G GDAGV++ VP
Sbjct: 106 SSSAARRVVQEE-PQVVEAVAARPSSRRSRREGNGDAGVKAVVP 148
>07_03_0132 - 14011468-14012124
Length = 218
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 339 ESGRNYQHHGRDADGEQ*SQRPHHASGWSGSERRDHTPG 455
+ G + HGR +G + +R + +SG +R +H G
Sbjct: 126 DGGERARDHGRSREGAKTIERSEGVAFYSGGKRAEHGRG 164
>05_01_0494 -
4120996-4121011,4121152-4121483,4122560-4122706,
4122818-4122871,4123203-4123367,4125516-4125827,
4125992-4126078,4126202-4126411
Length = 440
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 211 SQTVAPPPADYSNCTPLHAQPVFLH 285
+Q P D +C P H QP F H
Sbjct: 66 AQLARSPDGDVIDCVPSHLQPAFEH 90
>05_01_0478 - 3910575-3912989
Length = 804
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 298 NDRLAIWQGDITSLRV-DAITNTTDETL 378
N+R +IW GD+ S+ D I N++++ L
Sbjct: 414 NNRCSIWHGDLLSVNSNDGIDNSSEDVL 441
>05_01_0475 - 3818121-3820565
Length = 814
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 298 NDRLAIWQGDITSL-RVDAITNTTDETL 378
N + +IW GD+ S+ R D I N++++ L
Sbjct: 409 NSKCSIWHGDLLSVNRNDGIDNSSEDVL 436
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 438 RDHTPGT*VPAPARWW*RRGSVCSAGTSST 527
R H VP+P WW R SV G + T
Sbjct: 581 RSHNDQASVPSPMPWWCRPSSVSRDGEART 610
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,428
Number of Sequences: 37544
Number of extensions: 261392
Number of successful extensions: 1088
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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