Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j22
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1) 68 4e-12
SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_39916| Best HMM Match : RasGAP (HMM E-Value=0) 35 0.036
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 33 0.15
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_6621| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) 28 4.1
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_15305| Best HMM Match : Gln-synt_C (HMM E-Value=0) 27 7.2
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 7.2
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 7.2
SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11) 27 7.2
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
Length = 429
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +1
Query: 196 SVPRWSQTVAP--PPADYSNCTPLHAQPVFLHDDAINDRLAIWQGDITSLRVDAITNTTD 369
S+P+WS T P P + + P F D+ IN ++ +W GDIT L DAI NTT+
Sbjct: 11 SLPKWSTTPVPNYEPGSNESQSSSFLSP-FPVDEEINAKVVLWNGDITKLAADAIVNTTN 69
Query: 370 ETLTESNEVSDRIMQVAGPDLKEE 441
E+L++ +S+R+ + AGP+L +E
Sbjct: 70 ESLSDRGALSERVHRAAGPELMQE 93
>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 36.7 bits (81), Expect = 0.012
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 286 DDAINDRLAIWQGDITSLRVDAITN 360
D +ND++++W GDIT+L +DAI N
Sbjct: 67 DIKLNDKVSLWTGDITALEIDAIVN 91
>SB_39916| Best HMM Match : RasGAP (HMM E-Value=0)
Length = 757
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 435 FQIRTSHLHDAVADFIALRQRLVRGVGNCVHSQAC-YVALPYREAVVDRVVVQEH 274
FQ+R H VA + L + ++ +GN V S C V PY E++ ++ Q+H
Sbjct: 358 FQMRNEHPDPLVARTLTLASKAIQSLGNLVSSVICGQVKEPYMESLKAMILDQDH 412
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 307 LAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEE 441
+ ++QGDIT+ R DA+ N + L V+ I+ G ++EE
Sbjct: 5 VTVYQGDITNERADAVVNAANCDLIHGGGVAGAILAKGGWSIQEE 49
>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 304 RLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEI 444
+L + QGDI ++ DA+ T+ EV + + + G + K+EI
Sbjct: 812 KLTVVQGDIAAIDADAVVLPTNAKFKLEGEVGEALKKAGGKEFKDEI 858
>SB_6621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 272 GWACSGVQLE*SAGGGATVC--D-QRGTDQHSPGARIPHTE 159
GWA +G+++ GGG V D + GT SPG RIP+ E
Sbjct: 87 GWAVAGLKIIGGCGGGPFVALTDWEEGTSITSPGHRIPNVE 127
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 322 GDIT--SLRVDAITNT--TDETLTESNEVSDRIMQVAGPDLKEEII 447
GD+T + VDAI N T + ++ EVS + AGP L++E +
Sbjct: 1205 GDLTKENAPVDAIVNINGTSMDMQQAGEVSKAVSAAAGPGLQQECL 1250
>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
Length = 1224
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 262 HAQPVFLHDDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEE 441
HA +L A+ D IW S+R A N L ES V RI++++ P EE
Sbjct: 94 HACSFYLKLKALMDFFTIWAYSAVSIRGVAYNNNKCALLYES--VCTRIIELSNPAHLEE 151
Query: 442 I 444
+
Sbjct: 152 V 152
>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 339 ESGRNYQHHGRDADGEQ*SQRPHHASGWSGSERRD 443
ESGR H D++ E+ S+RP G +R+
Sbjct: 117 ESGRRRARHDTDSESERESRRPRARHDTDGESKRE 151
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 304 RLAIWQGDITSLRVDAITNTTDETLTESNE 393
+ A W G + LR+DA+ N + +ES+E
Sbjct: 132 KFASWTGSQSELRLDAMDNDVRQNYSESSE 161
>SB_15305| Best HMM Match : Gln-synt_C (HMM E-Value=0)
Length = 237
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 474 PVRALMCPEYDLFFQIRTSHLHDAV--ADFIALRQRLVRGVGNCVHSQACYVALPY 313
PVR + ++ H DA+ D +RLV+GV N QAC++A P+
Sbjct: 95 PVRTAISEYAPGQVELTLEHRFDALQAVDEGVRYKRLVKGVANKHGMQACFMAKPF 150
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 307 LAIWQGDITSLRVDAITNTTDETLT-ESNEVSDRIMQVAGPDLKEEIILRAHECPHRRGG 483
+++++GDIT VDAI + E L S +S + G +++++ + + + G
Sbjct: 460 ISVYKGDITEEAVDAIASPIGEALVCTSKGLSGVVATKGGRQVEDQLFKHSSKKWFKPSG 519
Query: 484 GD 489
G+
Sbjct: 520 GE 521
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 307 LAIWQGDITSLRVDAITNTTDETLT-ESNEVSDRIMQVAGPDLKEEIILRAHECPHRRGG 483
+++++GDIT VDAI + E L S +S + G +++++ + + + G
Sbjct: 500 ISVYKGDITEEAVDAIASPIGEALVCTSKGLSGVVATKGGRQVEDQLFKHSSKKWFKPSG 559
Query: 484 GD 489
G+
Sbjct: 560 GE 561
>SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11)
Length = 260
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 280 LHDDAINDRLAIWQGDITSLRVDAITNTTDETLTESN 390
+ DD +N LA D ++RVD TNTT+ T+ N
Sbjct: 156 ISDDGLNTLLAAL--DSLAVRVDFTTNTTNALFTQLN 190
>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 457 HECPHRRGGGDAGVRSAVPARHPH 528
H RRGGGDA V RH H
Sbjct: 33 HRKNQRRGGGDASFMFRVTIRHVH 56
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 259 LHAQPVFLHDDAI---NDRLAIWQGDITSLRVDAITNTTDETLTESNEV 396
LH LHDD D L + +GD +VD++ + D L E + V
Sbjct: 896 LHEDDSVLHDDDSVLHEDDLVLHEGDSILHKVDSVLHKGDSVLHEGDSV 944
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,331
Number of Sequences: 59808
Number of extensions: 275199
Number of successful extensions: 910
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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