Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j22
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote... 44 5e-05
At2g44210.1 68415.m05502 expressed protein Pfam profile PF03080... 33 0.16
At4g28580.1 68417.m04088 magnesium transporter CorA-like family ... 31 0.48
At3g53540.1 68416.m05912 expressed protein 31 0.48
At3g53560.1 68416.m05914 chloroplast lumen common family protein 31 0.63
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 29 1.5
At5g51840.1 68418.m06427 expressed protein 29 2.6
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 29 2.6
At4g39130.1 68417.m05540 dehydrin family protein contains Pfam d... 29 2.6
At5g50150.1 68418.m06211 expressed protein strong similarity to ... 27 5.9
At2g40600.1 68415.m05008 appr-1-p processing enzyme family prote... 27 5.9
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family... 27 7.8
At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF... 27 7.8
At1g23890.2 68414.m03013 NHL repeat-containing protein contains ... 27 7.8
>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
contains Pfam domain PF01661: Appr-1-p processing enzyme
family
Length = 562
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +1
Query: 286 DDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEE 441
D IN R+ +W+G+ +L VDA+ N+T+E L E++ S + AGP L E+
Sbjct: 80 DHEINSRIYLWRGEPWNLEVDAVVNSTNENLDEAHS-SPGLHVAAGPGLAEQ 130
>At2g44210.1 68415.m05502 expressed protein Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 415
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 214 QTVAPPPADYSNCTPLHAQPVFLHDDAINDRLAIWQGDITSLRVDAITNTTDETLTESNE 393
+++ P D +C P+ QP F H IN + +W SL +++ + + + N+
Sbjct: 47 KSIKSPDGDMIDCVPITDQPAFAHPLLINHTVQMW----PSLNPESVFSESKVSSKTKNQ 102
Query: 394 VSDRIMQV 417
S+ I Q+
Sbjct: 103 QSNAIHQL 110
>At4g28580.1 68417.m04088 magnesium transporter CorA-like family
protein (MRS2-6) weak similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 408
Score = 31.1 bits (67), Expect = 0.48
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 262 HAQPVFLHDDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEE 441
H+ + + AI L + + ITS +V + + E LT ++ + + GP E
Sbjct: 91 HSSKILAREKAIVLNLEVIKAVITSEQVMLLDSLRPEVLTLTDRLKHHFPRKDGP----E 146
Query: 442 IILRAHECPHRRGGGDAGVRSAVP 513
IL+A H+ GG+ G++S +P
Sbjct: 147 NILQASSHGHQE-GGEEGLKSKLP 169
>At3g53540.1 68416.m05912 expressed protein
Length = 924
Score = 31.1 bits (67), Expect = 0.48
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 439 EIILRAHECPHRRGGGDAGVRSAVPARH 522
+++ ++H PHR GGG +G S RH
Sbjct: 259 DLLRKSHRSPHRNGGGGSGCPSRSHTRH 286
>At3g53560.1 68416.m05914 chloroplast lumen common family protein
Length = 340
Score = 30.7 bits (66), Expect = 0.63
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 202 PRWSQTVAPPPADYSNCTPLHAQPVFLHDD--AINDRLAIWQGDITSLRVDAITNTTDET 375
P + +APPP+ S + V L ++ A+++ L D+ +LR
Sbjct: 92 PAIAAPIAPPPSVESK------ENVTLEEEERALDEHLITHPSDVDALRSLMEVKIKSRK 145
Query: 376 LTESNEVSDRIMQVAGPDLKEEIILRAH 459
LTE+ EV DR++++ P+ KE +L+A+
Sbjct: 146 LTEAVEVIDRLIKLE-PEEKEWPVLKAN 172
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 256 PLHAQPVFLHDDAINDRLAIWQGDI 330
PL PV L AI D IWQGD+
Sbjct: 797 PLVPSPVMLRSSAIPDHEFIWQGDL 821
>At5g51840.1 68418.m06427 expressed protein
Length = 245
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 330 NKLESGRNYQHHGRDADGEQ*SQRPHHASGWSGSERRDHTPG 455
N+ G+ +HG + G++ QRP A G S ++++ G
Sbjct: 178 NQTHPGKPENNHGNEEGGKEHGQRPATAEGESKAKKKPQNQG 219
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 322 GDITSLRVDAITNTTD-ETLTESNEVSDRIMQVAGPDLKEEIILRAHECPH-RRGGGD 489
G + + DA TT ET T S + + +Q P+L +EI L+ +E PH G GD
Sbjct: 897 GSCSCSKSDAEFPTTRCETKTVSG--TSQSVQTGSPNLSDEICLQGNERPHLYEGSGD 952
>At4g39130.1 68417.m05540 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 151
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 253 TPLHAQPVFLHDDAINDRLAIWQGDITSLR----VDAITNTTDET 375
TP HAQP+ + D + D W G ++ V TN TDET
Sbjct: 64 TPHHAQPISVSHDPLQDHDLRWFGTSSTEENGEGVGRKTNITDET 108
>At5g50150.1 68418.m06211 expressed protein strong similarity to
unknown protein (gb|AAF04872.1) contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 420
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 214 QTVAPPPADYSNCTPLHAQPVFLH 285
+T+ P D C P H QP F H
Sbjct: 70 KTIHSPDGDVIECVPSHLQPAFDH 93
>At2g40600.1 68415.m05008 appr-1-p processing enzyme family protein
contains Pfam domain PF01661: Appr-1-p processing enzyme
family
Length = 257
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 470 TGEVVVTPGFGLQCRHVIH 526
TGE +TPGF L VIH
Sbjct: 145 TGEARITPGFNLPASRVIH 163
>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
protein common family member:At2g33490 [Arabidopsis
thaliana]
Length = 608
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 148 AKDSSVCGMRAPGECWSVPRWSQTVAPPPADYSNCTPLHAQPV 276
AK + G AP W+ R + TVA P A +PL P+
Sbjct: 509 AKSPGLVGHSAPLTAWNQERSTVTVAVPSATNIVASPLPVPPL 551
>At1g30500.1 68414.m03728 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
Length = 186
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 154 DSSVCGMRAPGEC-WSVPRWSQTVAPPPADYSNCTPLHAQPVFLHDDAIND 303
D APG+ + P + APPP Y+ + Q V L DA+ +
Sbjct: 46 DPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGLMGVQQQGVPLPSDAVEE 96
>At1g23890.2 68414.m03013 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 400
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 200 TDQHSPGARIPHTELSLAEFSRLIFYVKLFDHNEPHTHTQRRN 72
+D SPG P LSL LI + D EP+ RN
Sbjct: 321 SDPESPGCGNPKPPLSLKPSDDLIDLISFDDEQEPNNDKDCRN 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,300
Number of Sequences: 28952
Number of extensions: 177985
Number of successful extensions: 555
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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