Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j21
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 57 3e-09
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 4.1
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 25 7.1
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 7.1
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 7.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.4
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.4
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 56.8 bits (131), Expect = 3e-09
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = +3
Query: 309 AKDWALMHGVGMRDKKHFNKDVIQIA---PFILLPSPFPKTEFMKAVELQPVLNELMHKV 479
A+D+A HGV + +K+ IA P L PS P F++AV +Q N+L K+
Sbjct: 18 ARDFAFAHGVVFTELS-VSKEGRNIATQIPITLFPSVIPHGAFVEAVSVQKAYNKLYAKI 76
Query: 480 AHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISH 593
A+D EFL LQ+ + DEF L++++ K E ++H
Sbjct: 77 ANDYEFLRLHLQSITKYDEFMNKLWNLYQK-HREAVAH 113
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 3 ISVCYLHSLKQTNRVTRNKI*QIHISYFFLDLIYLTF*GRKITIICNKELIIVQLLSKRV 182
+ + LH T++ + + Q H +Y F D+I GR+ + + EL +++L KRV
Sbjct: 334 VDIILLHQSHSTSKEWLSSLEQYHCTYLFRDVI-----GRRF-LDQSSELQGIEILLKRV 387
Query: 183 I 185
+
Sbjct: 388 L 388
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 348 DKKHFNKDVIQIAPFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQ 527
D+ + + I+ F+ +P+PF K++ AVE + + + H D +Q ++ A Q
Sbjct: 369 DRLNLSFGTIKEFDFVGVPAPFTKSQVDSAVE--QLKSRIAHFKEQQDSVTKQRIEKAKQ 426
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 198 ILTRSFQFFVSKMSQARLAPCLQLPLENKTLV 293
++ R F FF+S + C Q+ L+N+T +
Sbjct: 208 VVCRLFDFFISSHPLTVVYTCAQVVLDNRTSI 239
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 364 LKCFLSLIPTPCMRAQSLAFSITF 293
LK F+S +P PC + L + IT+
Sbjct: 346 LKYFISALPLPCFLSVQLRWFITY 369
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 384 APFILLPSPFPKTEFMKAVELQPVLNELMHK--VAHDDEFLEQ 506
APF LP P E+ +A+E QP+ E++ K H E +EQ
Sbjct: 235 APFERLPDPRMFPEYYQAIE-QPMALEVIQKKLSKHRYETIEQ 276
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 432 KAVELQPVLNELMHKV-AHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISHR 596
K +Q +LN L K+ AH ++F EQT ++ + +E +L + KVKN+ S +
Sbjct: 371 KKTLVQNLLNSLEGKLQAHLEKF-EQTERDISEKNEEVKSLREKAAKVKNDCTSEK 425
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -1
Query: 538 NSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKG-DGNSINGAI*ITSLL 362
+SST + S NS++ AT S+ + SSTA NS +S+N T+
Sbjct: 151 SSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 210
Query: 361 KCFLSLIPTPCMRAQSLAFS 302
S + + SLA S
Sbjct: 211 SSLSSTAASNSATSSSLASS 230
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 514 CKVCSKNSSSWAT--LCMSSFKTGCSSTAF 431
CK+C++ SS T +C S++ C F
Sbjct: 299 CKLCAQEGSSLVTCCICQSNYHYACVEAPF 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,016
Number of Sequences: 5004
Number of extensions: 46823
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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