Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j21
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756...    65   5e-11
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926...    54   1e-07
02_04_0076 - 19486360-19488723                                         33   0.20 
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    29   3.2  
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    28   7.4  
01_01_0308 + 2519384-2519726,2520350-2520663,2520931-2521110           27   9.7  

>12_02_0593 +
           20874459-20874575,20875258-20875427,20875597-20875672,
           20875764-20875894,20876570-20876692,20876780-20876893,
           20877163-20877239,20877405-20877472,20877740-20877861,
           20878041-20878180,20878411-20878603,20878692-20878827
          Length = 488

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
 Frame = +3

Query: 297 VIEKAKDWALMHGVGMRDKKHFNKDVIQ-----IAPFILLPSPFPKTEFMKAVELQPVLN 461
           ++ +A  W  +HG+ + D+       +       APF LLP+  P++ + +A EL P+ N
Sbjct: 18  MVREATAWCALHGLVVGDRADPRSGTVPGVGLVHAPFSLLPTHLPESHWRQACELAPIFN 77

Query: 462 ELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKV 572
           EL+ +V+ D +FL+ +L    QVD+FT+ L +I  K+
Sbjct: 78  ELVDRVSLDGDFLQDSLSKTKQVDDFTSRLLEIHRKM 114


>12_01_0933 -
           9263023-9263146,9263224-9263416,9263495-9263634,
           9263760-9263881,9263970-9264039,9264463-9264498,
           9264567-9264692,9265294-9265424,9265549-9265645,
           9265858-9266027,9267817-9267874,9268758-9269074
          Length = 527

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
 Frame = +3

Query: 384 APFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTL-------QNALQVDEFT 542
           APF LLP  F K  + +AVEL P+ NEL+ +V+ D +FL++TL           +VD FT
Sbjct: 138 APFALLPMSFSKVYWDQAVELAPLFNELVDRVSLDGDFLQETLASFSLSFSRTKEVDSFT 197

Query: 543 ANLYDIWLKV 572
             L DI  K+
Sbjct: 198 GRLLDIHAKM 207


>02_04_0076 - 19486360-19488723
          Length = 787

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 520 AFCKVCSKNSSSWATLCMSSFKTGCSSTA 434
           AF     +NSSSW ++ M+S + GC  TA
Sbjct: 640 AFRNTSGRNSSSWTSIIMASVENGCPETA 668


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +3

Query: 384  APFILLPSPFPKT-------EFMKAVELQPVLNELMHKVAHDDEFLEQTLQNAL 524
            APF L P P+P T        F K +E   ++  +M KV  D   L+  L  AL
Sbjct: 1455 APFGLFPRPWPLTVDASEGSRFSKVIEHFRLVGRVMAKVLQDGRLLDLPLSTAL 1508


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 471 HKVAHDDEFLEQTLQNALQVDEFTANLYDIW 563
           H+ +HD   LE +L NA++   F   L D+W
Sbjct: 298 HRSSHDRSVLELSLLNAIKGKNFILVLDDMW 328


>01_01_0308 + 2519384-2519726,2520350-2520663,2520931-2521110
          Length = 278

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 291 VNVIEKAKDWALMHGVGMRDKKHFNKDVIQI 383
           V+ +EK +DWA   G G RDK++   D+ ++
Sbjct: 200 VSALEKREDWAASSG-GERDKRNREGDLFRL 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,633,564
Number of Sequences: 37544
Number of extensions: 270355
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)