Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j21
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)      80   2e-15
SB_20609| Best HMM Match : Keratin_B2 (HMM E-Value=4)                  29   2.5  
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)
          Length = 372

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/99 (37%), Positives = 66/99 (66%)
 Frame = +3

Query: 294 NVIEKAKDWALMHGVGMRDKKHFNKDVIQIAPFILLPSPFPKTEFMKAVELQPVLNELMH 473
           N+   A D+ + +GV  R K   + D ++ APF+L P+P+P+  F +A  +Q   NEL+H
Sbjct: 80  NLAGSAADFLMGNGVLYRSKS--SADQVEHAPFMLFPTPYPRKLFDQAKAVQKDFNELVH 137

Query: 474 KVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGIS 590
           KV+ D EFL+++LQ+ + VD+F   +Y+++ +++ EGI+
Sbjct: 138 KVSLDHEFLKESLQSTMAVDKFMGRIYEMYEQIRKEGIA 176



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 575 KRGHISPISLGMLRSDIMLESRCP 646
           K G   PISL +LRSD M++S  P
Sbjct: 172 KEGIAQPISLSLLRSDYMIDSDKP 195


>SB_20609| Best HMM Match : Keratin_B2 (HMM E-Value=4)
          Length = 102

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -1

Query: 535 SSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINS 422
           ++T +A C V + N++S AT C+ ++ T   +T ++++
Sbjct: 9   NTTSQAICYVHTYNTTSQATRCVHTYNTTSQATRYVHT 46


>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +3

Query: 72  HISYFFLDLIYLTF*GRKITIICNKELIIVQLLSKRVIIVKVILTRSFQFFVSKMSQARL 251
           H+ Y  L +   T  G  +TI C++   IV  +  ++ + KV +     +FVS ++   L
Sbjct: 106 HVVYLVLPICVSTSIGSLLTISCDRYRAIVYPMKPKLTMNKVKIIIGLIWFVSALTALPL 165

Query: 252 APCLQL--PLENKTLVNVIEKAKDWALMHGVGM 344
           A  +    P  + T      +   W +++ V +
Sbjct: 166 ALVVTTFRPAPHVTYCTEFWRDASWGVLYWVAI 198


>SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 639 LDSSMMSERSIPSDIGEICPRFSLSTICHTNL 544
           L+  + +E S+ S +G+ICP   +S   H NL
Sbjct: 247 LEDYLDNESSLASGVGQICPSNQVSHKIHNNL 278


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -1

Query: 559 MSYKFAVNSST-CRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKGDGNSIN 389
           MSY    N     R     C ++S    T+  S+  + CS   F  +  GK DG  IN
Sbjct: 75  MSYTSGSNHKYYMRCTTSYCYRDSCPGDTVFKSNKWSSCSYDTFYINAIGKSDGQPIN 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,538,986
Number of Sequences: 59808
Number of extensions: 320327
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)