Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j21
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical pr...    80   1e-15
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    31   0.53 
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    31   0.53 
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    31   0.93 
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    30   1.6  
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL021492-13|CAA16381.2|  201|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical
           protein M176.2 protein.
          Length = 490

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
 Frame = +3

Query: 264 QLPLENKTLVNVIEKAKDWALMHGVGMR-DKKHFNKDVIQIAPFILLPSPFPKTEFMKAV 440
           +LPLE+  L  +     DWA  +G+ MR      + +V Q  P  LLPSPFPK  F +AV
Sbjct: 15  RLPLEDDKLNELTADLHDWAHANGLVMRLSTDKLSSEVCQTTPLTLLPSPFPKNVFEEAV 74

Query: 441 ELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGI 587
            +Q +   L H +A++ +FL    +N ++ D+FT N+ +I  KVK +G+
Sbjct: 75  HIQNLFASLYHFIAYEFDFLIDIHKNVVKTDDFTRNMVEILKKVKAQGL 123


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 345 RDKKHFNKDVIQIAPFILLPSPFPKTEFMKAVEL-QPVLNELMHKVAHDDEFLEQTLQNA 521
           R + H+    + +AP I     + +   +KA+ L  P + +L H   H  E L +     
Sbjct: 326 RTQAHYTSKTMSVAPLIRYQIQYIEYTLLKAICLCNPAVPDLSH---HAQEILSK----- 377

Query: 522 LQVDEFTANLYDIWLKVKNEGISH 593
            + +++   L+D  L+ +N+G SH
Sbjct: 378 -EREKYADALFDYCLRTRNDGPSH 400


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 345 RDKKHFNKDVIQIAPFILLPSPFPKTEFMKAVEL-QPVLNELMHKVAHDDEFLEQTLQNA 521
           R + H+    + +AP I     + +   +KA+ L  P + +L H   H  E L +     
Sbjct: 326 RTQAHYTSKTMSVAPLIRYQIQYIEYTLLKAICLCNPAVPDLSH---HAQEILSK----- 377

Query: 522 LQVDEFTANLYDIWLKVKNEGISH 593
            + +++   L+D  L+ +N+G SH
Sbjct: 378 -EREKYADALFDYCLRTRNDGPSH 400


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 553 YKFAVNSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTA 434
           Y  A+ +  C A C +CS +S S ++   +S  + C+ +A
Sbjct: 152 YTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTDSA 191


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/64 (23%), Positives = 24/64 (37%)
 Frame = -1

Query: 526  CRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKGDGNSINGAI*ITSLLKCFLS 347
            C   CK C+KN       C  + +  C        V+   D + ++G   I   ++C   
Sbjct: 1303 CAKMCKKCAKNVQKMCKKCAKNVQKMCKKYGLEVPVYSNDDEHPLDGPHTILHAVQCPKK 1362

Query: 346  LIPT 335
             I T
Sbjct: 1363 FIAT 1366


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 83  FFS*FNLFDVLRKKNYNYLQQRINY 157
           FF  FN F+ L + NYNYL+   N+
Sbjct: 67  FFQTFNRFEKLLRGNYNYLRSISNW 91


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 541 VNSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSST 437
           V + TC A+C++C K  S   T  +  F   C  T
Sbjct: 227 VPTETCGAYCRICLKKYSENDTKSVPRFLFACGHT 261


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 562 HMSYKFAVNSSTCRAFCKVCSKNSSSWATLCMS 464
           ++ YKF   +S    F K+C+  + +  T+CMS
Sbjct: 37  YLFYKFVTRASKPSGFQKLCTMKTFTNCTICMS 69


>U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical
           protein T05A7.2 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 69  IHISYFFLDLIYLTF*GRKITIICNKELIIV 161
           +H S+ FL L+YLTF     ++ICN    +V
Sbjct: 1   MHFSFIFLVLVYLTF-AFGDSLICNNGFTVV 30


>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +3

Query: 432 KAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISHRYR 602
           K  E Q  L+    K  +D++ L+++ +NAL++++       + ++ +N  I H+ R
Sbjct: 154 KKAEAQEKLHS--EKKEYDEKKLQKSEENALKIEDLHKQTAQLEIEKENNAIEHQNR 208


>AL021492-13|CAA16381.2|  201|Caenorhabditis elegans Hypothetical
           protein Y45F10D.6 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 264 QLPLENKTLVNVIEKAKDWALMHG 335
           +LP E+ T +N  E  K W L+HG
Sbjct: 148 ELPKEHSTHINGKELPKGWVLVHG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,711
Number of Sequences: 27780
Number of extensions: 259280
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)