Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j20
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 65 6e-12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 55 8e-09
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 49 4e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 43 3e-05
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 8e-05
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 2e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.005
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.051
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.051
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 31 0.15
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.20
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.27
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.36
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.47
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.62
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.82
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.4
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 3.3
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 3.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.7
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 7.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 65.3 bits (152), Expect = 6e-12
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXX 371
+LYVG LDPSVTE L LF IG V ++ R+ + YA++ F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 552 RI 557
++
Sbjct: 198 KV 199
Score = 46.4 bits (105), Expect = 3e-06
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 377
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H +N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 378 KRVVLDKEMKVNWATSPG----------NQPKTDTSNHH---HIFVGDLSPEIETNILRE 518
+ K++ V A Q K + N + ++F+ +L E++ L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 519 AFAPFGEISNCRIV 560
F+ FG I++ +I+
Sbjct: 383 EFSAFGTITSAKIM 396
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.8 bits (126), Expect = 8e-09
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEFTCHXXXXXXXXX 371
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 372 MNKRVVLDKEM-KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFA 527
NK + + K+NWA+ G + K+ ++ + IFVGDLSP + + FA
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFA 207
Score = 32.7 bits (71), Expect = 0.038
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 30/149 (20%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 368
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 369 XMNKRVVLDKEMKVNWAT--------SPGN---------------QPK---TDTSNHHHI 470
M ++ D+ ++V AT SP N QP DT+N +
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST-V 305
Query: 471 FVGDLSPEIETNILREAFAPFGEISNCRI 557
FVG LS + L+ F FGEI +I
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKI 334
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 49.2 bits (112), Expect = 4e-07
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 353
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
+N+ + K ++VN A+ +T ++FVG+L P ++ +L + F+
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 534 GEI 542
G++
Sbjct: 123 GQL 125
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 43.2 bits (97), Expect = 3e-05
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +3
Query: 198 KTLYVGNLDPS--VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXX 371
KT+YVGNL P+ + E+ C + G ++ I+ E +FL+ H
Sbjct: 115 KTVYVGNLPPNTPIDEILSCV---RTGPIESAWILPEKNCAFISFLD-PSHATAFFQDAA 170
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 536
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 537 EISNCRIV 560
I +IV
Sbjct: 231 PIDQIKIV 238
Score = 28.3 bits (60), Expect = 0.82
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+T+Y+GN+ T +C + G + + ++E F++ ++
Sbjct: 323 RTVYIGNIHADTTIEEICNAV-RGGLLHNIRYLQEKHICFVTFVD-PVSAFRFFEMSNIH 380
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEI 542
V+ ++ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEI 440
Query: 543 SNCRIVR 563
R
Sbjct: 441 EYVNFFR 447
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 8e-05
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 174 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 335
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 195 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXX 359
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 360 XXXXMNKRVVLDKEMKVN 413
MN ++ D+ ++V+
Sbjct: 62 AMENMNYSILCDRCIRVS 79
Score = 31.9 bits (69), Expect = 0.067
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+ VG+L+P + ++L AF PFGEI + + R
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHR 39
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 165 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 374
++VGN+ V+E + +F Q+G VK K++ +P Y F EF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 375 NKRVVLDKEMKVNWATSPGNQPKTDTS 455
N + ++++V + P N P+ + S
Sbjct: 69 NNSELGPRKIRVEF---PSNDPRRNQS 92
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.051
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEFTCHXXXXXXXXXM 374
L+V L+P + L +F + G + C++IR E G+ YAF+EF M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 375 NKRVVLDKEMKVNWATSPGNQPKTDTSN 458
++ D + V+++ S + SN
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSN 333
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FV L+P + L F+ FG+I +C+++R
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIR 277
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.051
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
I+VG LS IE++ L F+ FG +SN I+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.1 bits (67), Expect = 0.12
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEFTCHXXX 353
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 354 XXXXXXMNKRVVLDKEMKVNWATS 425
M +LD+ ++V+ S
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVAS 109
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+F+G L+ E + LR+ F FGE+ +C ++R
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMR 196
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
+++G L+ T+ L F Q G+V C ++R+ F M+K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 384 VVLDKEMKVNWATSPGNQ-PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
LD ++ P P+ + +FVG + + R F FG + + ++
Sbjct: 225 HHLDGKI-----IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 429 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
GN K T ++VG+LS ++ L+E G + NC I+
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.9 bits (64), Expect = 0.27
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 456 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
NH +FVG+L ++ L +AF+ + + ++VR
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVR 63
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.47
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 444 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
++T+ ++F+G+L + EAF FG+I + +I+
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 0.62
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +3
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 552 RIVR 563
RIVR
Sbjct: 300 RIVR 303
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 335
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRI 557
+FVG L+ + L+ F PFG I N +I
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 335
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 338
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKG 284
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEIS 545
I+VG+L +++ L E F PFG S
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFS 47
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVK 281
E T+YVGN+D +++ + F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEI 542
+FV ++SP + + LR F FGE+
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEV 120
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+FVG + P+ + + F +G+I +C+++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 193 WL--SSPILAYR-NLSITFLTSMNTNIN 119
WL ++ ILAYR NL FLT + N+N
Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,076
Number of Sequences: 5004
Number of extensions: 45346
Number of successful extensions: 149
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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