Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j20
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 7e-29
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 44 7e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.040
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.070
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 33 0.12
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.16
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 0.28
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.49
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 31 0.65
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.86
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.86
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 30 1.5
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 30 1.5
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.0
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 2.6
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 29 2.6
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 2.6
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 4.6
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_54437| Best HMM Match : DUF226 (HMM E-Value=2) 27 8.0
SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30) 27 8.0
SB_21655| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-30) 27 8.0
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 124 bits (298), Expect = 7e-29
Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXXX 362
E ++LYVGNLDP T+ +C++F +I V CK+I P + PY F+EF H
Sbjct: 365 EEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEA 424
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
M++R V+DK++KVNWAT+ + DT+NH HIFVGDL+ ++ +LR+ F PFGEI
Sbjct: 425 KFRMDQRTVMDKKLKVNWATNHPGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPFGEI 484
Query: 543 S 545
S
Sbjct: 485 S 485
Score = 33.9 bits (74), Expect = 0.092
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFL 329
T+YVGNL P V + L +F Q G + K+ + G YAF+
Sbjct: 616 TVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKG---YAFI 655
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Frame = +3
Query: 288 KIIREPGNDP---YAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKT---- 446
+++++P + + F+ F M+ + K++K NWA N +T
Sbjct: 543 RVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPLV 602
Query: 447 -DTSNHHH------IFVGDLSPEIETNILREAFAPFGEISNCRI 557
D H ++VG+L P+++ L++ F+ +G I ++
Sbjct: 603 WDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKV 646
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXX 350
G L + + PS+++ + +FG +G+V CK+IR+ YAF+ +
Sbjct: 21 GTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDD 80
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 530
MN + +K +KV++A +P + + ++++ L +++ + F P
Sbjct: 81 ANKAVREMNGARLQNKTLKVSFA-----RPSSTEIKNANLYISGLPKDMKEEEVEALFKP 135
Query: 531 FGEISNCRIVR 563
FG+I ++++
Sbjct: 136 FGKIITSKVLK 146
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 44.4 bits (100), Expect = 7e-05
Identities = 33/127 (25%), Positives = 58/127 (45%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D +TL+VGN++ + T L F + G+V I ++PGN+PYAF++F
Sbjct: 244 DPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQA 303
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
M++ V +KV + K + N I+VG ++ + + F +G +
Sbjct: 304 RRKMDREYVGRNRVKVGFG-------KVNPIN--TIWVGGVTNSLSEQQVERHFGRYGRV 354
Query: 543 SNCRIVR 563
+ I R
Sbjct: 355 TKVVINR 361
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDPY--AFLEFTCHXXXXXXXXX 371
TL V + +T+ +F + + CKI+R +P Y F+++
Sbjct: 48 TLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDK 107
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N + +K +KV + ++P D + +++V ++ ++ R+AF +G I NC
Sbjct: 108 LNGFTIGNKVLKVAF-----SRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNC 162
Query: 552 RIVR 563
R++R
Sbjct: 163 RLLR 166
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-------YAFLEFTC 341
D + L++GNLD ++E + + Q G+++ + + GN P Y F+EF
Sbjct: 382 DAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFH-GNGPNRGEPRGYCFVEFKK 440
Query: 342 HXXXXXXXXXMNKRVVLDKEMKVNWA 419
+NK++VL + + V+WA
Sbjct: 441 KEDARKALRGLNKKIVLSRALVVDWA 466
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH-XXXXXXXXXMN 377
TLYVG L+ VTE L F Q G+++ ++ AF+ FT N
Sbjct: 305 TLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQN---CAFVCFTSRAAAEAAADRSFN 361
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHH 464
K ++ + +K+ W S G QP H
Sbjct: 362 KLILKGRRLKIMWGKSQGQQPAPGRQGGH 390
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEF 335
+T++V NLDP +T L + F GD+K ++ + G YA++EF
Sbjct: 72 RTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEF 118
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 35.1 bits (77), Expect = 0.040
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Frame = +3
Query: 180 GDESHP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEF--TC 341
G ++P +LYVG+L P VTE L F G V ++ R+ + YA++ F
Sbjct: 6 GAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPG 65
Query: 342 HXXXXXXXXXMNKRVVLDKEMKV-NWATSPGNQPK--TDTSNHHHIFVGDLSPEIETNIL 512
H ++ ++ DK++ V W + K T +++V + +++ +
Sbjct: 66 HDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQM 125
Query: 513 REAFAPFGEISNCRIV 560
+E A G+I + +++
Sbjct: 126 KEICAEAGKIVSLKVM 141
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 438 PKTDTSNHH--HIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P T +N+ ++VGDL+P++ +L E F+ G + + R+ R
Sbjct: 3 PSTGAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCR 46
Score = 31.5 bits (68), Expect = 0.49
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMN 377
LY+ NLD + + L F G + K+++ + GN + F+ F+ MN
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 273
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVG 479
R+++ K + V A + + H H G
Sbjct: 274 GRILISKPLYVALAQRREERKAQLAAQHMHRISG 307
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 465 HIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
++++ +L I+ LRE F+P+G IS+ ++++
Sbjct: 213 NLYIKNLDDPIDDERLREEFSPYGTISSAKVMK 245
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 34.3 bits (75), Expect = 0.070
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXXM 374
L+V L+P T+ L +F + G + C++IR+ YAF+EF M
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 375 NKRVVLDKEMKVNWATS 425
+ ++ D+ + V+++ S
Sbjct: 182 DNVLIDDRRIHVDFSQS 198
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 453 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
+N +VG L+ E++ +L AF PFG+I++ +I
Sbjct: 2 ANKRVAYVGGLAEEVDEKVLHAAFIPFGDITDVQI 36
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG 308
KTL+V N+ P T++ + LFG+ G VK + ++PG
Sbjct: 42 KTLFVINVPPYCTKLAIKKLFGKCGGVKSVYLHKQPG 78
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
PK N +FVG L+ + L++ F FGE+ + RI+R
Sbjct: 72 PKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMR 113
Score = 32.7 bits (71), Expect = 0.21
Identities = 30/125 (24%), Positives = 50/125 (40%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXX 365
E + ++++VG L E L F Q G+V+ +I+R FL ++ +
Sbjct: 76 EKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMR-------TFLGYSRNYGFVLFK 128
Query: 366 XXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEIS 545
+ VL K +N T + + N I+VG L +RE F FG I
Sbjct: 129 DDGPSKEVLKKSHVINGKTVDVGKSR----NFRVIYVGGLPSHFTEQTVREHFKKFGVIE 184
Query: 546 NCRIV 560
+ +
Sbjct: 185 AVKFI 189
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 177 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEF 335
MGD+ K ++V + TE L F + G VK KI+R+ + YAF+ F
Sbjct: 1 MGDQDISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITF 55
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.5 bits (68), Expect = 0.49
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDV-KGCKIIR--EPGNDP-YAFLEFTCHXXXXXXXXX 371
L++GNLD V E L F G + + KI+R + GN +AF+ F
Sbjct: 102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEA 161
Query: 372 MNKRVVLDKEMKVNWA 419
MN + + ++ + V++A
Sbjct: 162 MNGQYLCNRPITVSYA 177
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 210 VGNLDPSVTEVFLCTLFGQIGDVKGCKIIR 299
+ NL P+V+ + LFG IG +K CK++R
Sbjct: 20 ISNLHPAVSRQDIEELFGAIGVLKSCKMLR 49
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 210 VGNLDPSVTEVFLCTLFGQIGDVKGCKIIR 299
+ NL P+V+ + LFG IG +K CK++R
Sbjct: 225 ISNLHPAVSRQDIEELFGAIGVLKSCKMLR 254
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 447 DTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
D ++ H +F+G+L +IE LRE F G + + R++R
Sbjct: 49 DKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIR 89
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 30.7 bits (66), Expect = 0.86
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +3
Query: 135 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGC-----KIIR 299
+ VK VI+ ++ S L + NL + TE L F G+V K+ R
Sbjct: 226 VKVKAVIESKDKSSSPKGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGR 285
Query: 300 EPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWA 419
+ F++FT MN + +L + + V+WA
Sbjct: 286 RNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRPVAVDWA 325
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
T+++ NL T+ + LF Q GD+ CK++
Sbjct: 417 TVFIRNLSFDSTQKNITNLFKQFGDIAYCKVV 448
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 195 PKTLYVGNLDPSVTEVFLCTLFGQIGDV 278
PK L+VG L S TE L F Q G+V
Sbjct: 198 PKKLFVGRLPESTTEKTLMEYFAQFGEV 225
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 435 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
+PK + + +FVG L L E FA FGE+++ I
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
I++ D P+I + L F P+G I + I+R
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIR 96
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCHXXX 353
DE P +Y+G++ E + F Q G V ++ R + YAF+EF C
Sbjct: 93 DELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVA 152
Query: 354 XXXXXXMNKRVVLDKEMK 407
M+ ++ + +K
Sbjct: 153 KIAADTMHNYMMFGRLLK 170
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXX 371
T+YVGNL S+T L +F + G V I+R+ + AF+ F
Sbjct: 11 TVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
Query: 372 MNKRVVLDKEMKVNWATSPGNQPK 443
+NK+ + + +K A G P+
Sbjct: 71 VNKKQMFGRTIKCTIAKDNGRAPE 94
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 435 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
Q T+ +FVG L+ E LRE F +GE+++ ++
Sbjct: 5 QENTNNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVI 46
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 195 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXX 365
P LYVG+L ++TE + +F G V ++I + + Y F++F
Sbjct: 241 PTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAM 300
Query: 366 XXMNKRVVLDKEMKVNWATSPGN 434
MN + + +K+ T G+
Sbjct: 301 EQMNGFELAGRPLKIGPVTERGD 323
>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 365
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 398 LVEDHSLVHGGQRCGRRRVTRKLEKCIRVISWLPYNLATFYIAYL 264
LV D+S C RRRV R + K I+ + + TF+ ++
Sbjct: 224 LVSDNSFSDSSDECERRRVQRCIRKRIKTTKNILLVVCTFFFCWM 268
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.1 bits (62), Expect = 2.6
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVT--EVFLC-TLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 353
D +TL+VGNL+ ++ ++ L FG + DV + R GN YAF++F
Sbjct: 232 DPKATRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGN-TYAFVKFADLDVA 290
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
M + + +K+ + S Q T ++VG L P I L F F
Sbjct: 291 AKAKCAMQGQCIGRNHIKIGYGRS---QQTT------RLWVGGLGPWISIPELEREFDRF 341
Query: 534 GEI 542
G I
Sbjct: 342 GAI 344
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 ANMG-DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG-NDPYAFLEF 335
+NM S+ +YVGNL V E L +F + G + + G P+AF+EF
Sbjct: 251 SNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEF 307
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 456 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
N IF GDL E+ L AFA + +IVR
Sbjct: 215 NDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVR 250
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 402 MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
M V T+ G D SN +FVG + E LR F P+G+I I++
Sbjct: 151 MDVKTITNGGTTSVRD-SNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILK 203
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FVG +S + LR F+PFG I ++R
Sbjct: 216 LFVGMISKHAKEEDLRVMFSPFGTIEELTVLR 247
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 4.6
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 8/135 (5%)
Frame = +3
Query: 177 MGDESHPKTLYVGNLDPSVTEVFLCTLF-----GQIGDVKGCKIIREP--GNDPYAFLEF 335
MGD+S L+VG L+ TE + F G DV + + P + + F+EF
Sbjct: 1 MGDDSKLMKLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEF 60
Query: 336 T-CHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 512
+ + +K+++V A + + +F+G L E +
Sbjct: 61 SNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDDPNELAHVRTKKLFIGGLKDEHSEEDV 120
Query: 513 REAFAPFGEISNCRI 557
+ A AP + I
Sbjct: 121 KTALAPLSPFAPLEI 135
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 426 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
P + K +F+G L I +I+ E F GEI++ RI
Sbjct: 339 PMQKQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRI 382
>SB_54437| Best HMM Match : DUF226 (HMM E-Value=2)
Length = 364
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +3
Query: 126 LVFIDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLF---GQIGDV-KGCKI 293
LV + +KK+ID+ + E HP L +PS F Q+ V K C+
Sbjct: 24 LVIVRIKKIIDQFHLVGIWREKHPNELAYTWCNPSYKVQCRLNYFLISSQLSQVTKDCEN 83
Query: 294 IREPGNDPYAFL 329
+P +D A L
Sbjct: 84 FFDPFSDHSAIL 95
>SB_34318| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-30)
Length = 343
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 311 ISWLPYNLATFYIAYLTKQR 252
I W+PY+ T YI+Y+ K +
Sbjct: 251 ICWVPYHALTLYISYVWKNK 270
>SB_21655| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-30)
Length = 343
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 311 ISWLPYNLATFYIAYLTKQR 252
I W+PY+ T YI+Y+ K +
Sbjct: 251 ICWVPYHALTLYISYVWKNK 270
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 189 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
+H L V NLD VT L F Q GDV+ ++
Sbjct: 123 THAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVV 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,779
Number of Sequences: 59808
Number of extensions: 347329
Number of successful extensions: 767
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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