Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j20
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 153 8e-38
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 130 7e-31
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 79 5e-24
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 91 5e-19
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 75 4e-14
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 58 4e-09
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 52 4e-07
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 51 5e-07
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 51 5e-07
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 50 2e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 43 1e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 43 1e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 43 1e-04
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 42 2e-04
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 42 2e-04
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 42 2e-04
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 42 2e-04
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 42 2e-04
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 42 2e-04
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 42 2e-04
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 38 0.007
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 38 0.007
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.009
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 37 0.012
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 37 0.012
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 37 0.012
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 36 0.015
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 36 0.015
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 36 0.015
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 35 0.046
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.046
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 35 0.046
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 35 0.046
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.061
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 34 0.061
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.081
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.081
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 33 0.11
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 32 0.25
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 32 0.25
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 32 0.25
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 31 0.43
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 0.57
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 0.57
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.57
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 0.57
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.76
U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 29 1.7
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 1.7
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 3.1
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 3.1
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 3.1
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 3.1
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 4.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 4.0
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 28 4.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 4.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 5.3
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 153 bits (371), Expect = 8e-38
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 353
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I + NDPYAF+EF+ H
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQA 97
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 530
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF P
Sbjct: 98 SQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP 157
Query: 531 FGEISNCRIVR 563
FG++S+ +++R
Sbjct: 158 FGDVSDAKVIR 168
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 375 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 509
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 256
Query: 510 LREAFAPFGEISNCRIVR 563
R+ FA FG I+ RI +
Sbjct: 257 -RQGFASFGRITEVRIFK 273
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 130 bits (314), Expect = 7e-31
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 4/127 (3%)
Frame = +3
Query: 195 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 374
P+TL+V NLDP++T+ FL TLF QIG V KII E NDPYAF+EF+ H
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSH 98
Query: 375 NKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
N R +L+KEM V WA P N+ K +TS H H+FVGDL EI++ LREAF FGE+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 543 SNCRIVR 563
S +I+R
Sbjct: 159 SEAKIIR 165
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 374
++VG+L + L F + G+V KIIR+ + Y F+ + M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 375 NKRVVLDKEMKVNWAT 422
N + + ++ NWAT
Sbjct: 194 NGAWLGRRTIRTNWAT 209
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 79.0 bits (186), Expect(2) = 5e-24
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +3
Query: 372 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+ K V+ EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 72 VTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 131
Query: 549 CRIVR 563
+++R
Sbjct: 132 AKVIR 136
Score = 49.6 bits (113), Expect(2) = 5e-24
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 375 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 509
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 224
Query: 510 LREAFAPFGEISNCRIVR 563
R+ FA FG I+ RI +
Sbjct: 225 -RQGFASFGRITEVRIFK 241
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 91.1 bits (216), Expect = 5e-19
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 372 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
Query: 549 CRIVR 563
+++R
Sbjct: 61 AKVIR 65
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 375 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 509
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 94 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 153
Query: 510 LREAFAPFGEISNCRIVR 563
R+ FA FG I+ RI +
Sbjct: 154 -RQGFASFGRITEVRIFK 170
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 74.9 bits (176), Expect = 4e-14
Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +3
Query: 402 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
MKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+ +++R
Sbjct: 1 MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIR 55
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 375 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 509
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 84 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 143
Query: 510 LREAFAPFGEISNCRIVR 563
R+ FA FG I+ RI +
Sbjct: 144 -RQGFASFGRITEVRIFK 160
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 58.0 bits (134), Expect = 4e-09
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+VL + ++ A+ P + + DTS H H+FVGDLS ++ +L+ F FGE+S +++R
Sbjct: 109 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 168
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 353
D S ++VG+L V+ L T FG++ + K + ++ + Y F+ F
Sbjct: 130 DTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 189
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTD-----------TSNHHHIFVGDLSPEIE 500
MN + + + ++ NWA ++ D +++ ++VG++S +
Sbjct: 190 ENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTT 249
Query: 501 TNILREAFAPFGEISNCRIVR 563
LR+ F+ +G+I+ RI +
Sbjct: 250 DADLRDLFSTYGDIAEVRIFK 270
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 51.6 bits (118), Expect = 4e-07
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 353
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 534 GEI 542
G I
Sbjct: 124 GVI 126
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 51.6 bits (118), Expect = 4e-07
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 353
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 18 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 77
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 78 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 133
Query: 534 GEI 542
G I
Sbjct: 134 GVI 136
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 371
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 552 RI 557
++
Sbjct: 175 KV 176
Score = 34.7 bits (76), Expect = 0.046
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 377
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 378 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 549 CRIV 560
++
Sbjct: 267 AVVM 270
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P T + +++GDL P++ +L E F+ G + + R+ R
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCR 90
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 371
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 552 RI 557
++
Sbjct: 175 KV 176
Score = 34.7 bits (76), Expect = 0.046
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 377
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 378 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 549 CRIV 560
++
Sbjct: 267 AVVM 270
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P T + +++GDL P++ +L E F+ G + + R+ R
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCR 90
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 371
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 552 RI 557
++
Sbjct: 150 KV 151
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 377
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 378 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 548
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITS 241
Query: 549 CRIV 560
C ++
Sbjct: 242 CEVM 245
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 417 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
A PG + ++VGDL P++ +IL E F+ G + + R+ R
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCR 65
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 371
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 552 RI 557
++
Sbjct: 150 KV 151
Score = 37.1 bits (82), Expect = 0.009
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 377
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 378 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 548
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241
Query: 549 CRIV 560
C ++
Sbjct: 242 CEVM 245
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 417 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
A PG + ++VGDL P++ +IL E F+ G + + R+ R
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCR 65
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +3
Query: 201 TLYVGNLDPS----VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC-HXXXXXXX 365
TLY+GNL PS VTE L F Q GD++ +++ E G AF+EFT
Sbjct: 236 TLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKG---CAFIEFTTREAAERAAE 292
Query: 366 XXMNKRVVLDKEMKVNWATSPGNQPKTDTSNH 461
NK + K + + W P + D SN+
Sbjct: 293 RSFNKTFIKGKRLTIRWG-EPQAKRAADNSNY 323
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Frame = +3
Query: 183 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 350
D KT L + L +T+ + +LF IG+++ CK++R+ G Y F+ +
Sbjct: 36 DIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREED 95
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 530
N + +K +KV++A +P D +++V + + + L F P
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSYA-----RPSNDQIKGSNLYVSGIPKSMTLHELESIFRP 150
Query: 531 FGEISNCRIV 560
FG+I RI+
Sbjct: 151 FGQIITSRIL 160
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 375 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 512
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 513 REAFAPFGEISNCRIVR 563
+ F FGEI C++ R
Sbjct: 224 KSVFEAFGEIVKCQLAR 240
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 335
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 375 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 512
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 513 REAFAPFGEISNCRIVR 563
+ F FGEI C++ R
Sbjct: 224 KSVFEAFGEIVKCQLAR 240
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 335
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 374
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 375 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 512
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 513 REAFAPFGEISNCRIVR 563
+ F FGEI C++ R
Sbjct: 224 KSVFEAFGEIVKCQLAR 240
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 335
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC 341
+ + + L++G L E L +F + G ++ C ++R+ L C
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGMLSAAC 189
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 557
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 558 VR 563
+R
Sbjct: 174 LR 175
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 37.5 bits (83), Expect = 0.007
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Frame = +3
Query: 171 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 338
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 339 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 512
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 513 REAFAPFGEISNCRIV 560
++ F +G++ + ++
Sbjct: 151 KQYFETYGKVEDAMLM 166
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 396 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++R
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMR 78
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 37.5 bits (83), Expect = 0.007
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Frame = +3
Query: 171 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 338
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 339 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 512
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 513 REAFAPFGEISNCRIV 560
++ F +G++ + ++
Sbjct: 151 KQYFETYGKVEDAMLM 166
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 396 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++R
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMR 78
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.1 bits (82), Expect = 0.009
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 377
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 378 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 548
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 119 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 178
Query: 549 CRIV 560
C ++
Sbjct: 179 CEVM 182
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 30 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 86
Query: 552 RI 557
++
Sbjct: 87 KV 88
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 183 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 350
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATS 425
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FV L+P L F+ FG+I+NC IVR
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVR 274
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 183 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 350
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATS 425
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FV L+P L F+ FG+I+NC IVR
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVR 274
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 183 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 350
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 166 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 225
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATS 425
M+ ++ D+ + V+++ S
Sbjct: 226 CEQAFFKMDNVLIDDRRIHVDFSQS 250
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FV L+P L F+ FG+I+NC IVR
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVR 205
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 36.3 bits (80), Expect = 0.015
Identities = 29/113 (25%), Positives = 49/113 (43%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
++ ++++V +A + I V +LSP + +L AF+ FG++
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDV 215
Score = 34.7 bits (76), Expect = 0.046
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 36.3 bits (80), Expect = 0.015
Identities = 29/113 (25%), Positives = 49/113 (43%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 384 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
++ ++++V +A + I V +LSP + +L AF+ FG++
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDV 215
Score = 34.7 bits (76), Expect = 0.046
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 36.3 bits (80), Expect = 0.015
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPG-NDPYAFLEFTCHXXXXXXXX 368
+TLYVG VTE L F GDV I E G + + F+EF
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 369 XMNKRVVLDKEMKVNWATSP 428
MN+ + K ++VN+A P
Sbjct: 71 NMNESELFGKTIRVNFARPP 90
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.046
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.046
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 359
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 360 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 539
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 540 ISN 548
+ N
Sbjct: 277 VEN 279
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.046
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 359
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 360 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 539
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 540 ISN 548
+ N
Sbjct: 277 VEN 279
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.7 bits (76), Expect = 0.046
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 359
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 141 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 195
Query: 360 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 539
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 196 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 253
Query: 540 ISN 548
+ N
Sbjct: 254 VEN 256
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.061
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FVG+L +++N L++ F PF +++ C IV+
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVK 36
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.061
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FVG+L +++N L++ F PF +++ C IV+
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVK 36
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.081
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXX 368
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 369 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENK---------KVFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 432 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
N T + IFVG +SPE+ L F +GE++ ++
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQV 60
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.081
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXX 368
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 369 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENK---------KVFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 432 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
N T + IFVG +SPE+ L F +GE++ ++
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQV 60
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 335 YVSHGGGHSAGRHEQASGPRQGNEG 409
Y S G +S ++QA G RQGN G
Sbjct: 266 YQSFAGNNSGFDYQQAQGARQGNNG 290
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 417 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
A PG + ++VGDL P++ +IL E F+ G + + R+ R
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCR 65
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 32.3 bits (70), Expect = 0.25
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 374
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 375 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 539
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 540 ISNCRIVR 563
+ ++R
Sbjct: 150 LDEVTVLR 157
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 32.3 bits (70), Expect = 0.25
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 374
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 375 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 539
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 540 ISNCRIVR 563
+ ++R
Sbjct: 150 LDEVTVLR 157
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +3
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTS------NHHHIFVGDLSPEIETNILREAFAPFGE 539
K+ + +++ K + S G Q D S N +F GDL E+ +L +AF +
Sbjct: 169 KKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPS 228
Query: 540 ISNCRIVR 563
++VR
Sbjct: 229 FQKAKVVR 236
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.5 bits (68), Expect = 0.43
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXX 371
++YVGN+ TE + F +G V +I+ RE G +AF+EF+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 372 MNKRVVLDKEMKVNWA 419
+N + ++VN+A
Sbjct: 67 LNGVAFNGRNLRVNYA 82
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 311
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 184 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 225
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 311
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 158 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 199
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 447 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+ N IFVG L+ +++RE ++ FGEI++ ++R
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 378 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 549 CRIV 560
I+
Sbjct: 143 SEII 146
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 447 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+ N IFVG L+ +++RE ++ FGEI++ ++R
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 378 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 549 CRIV 560
I+
Sbjct: 143 SEII 146
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 447 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+ N IFVG L+ +++RE ++ FGEI++ ++R
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 378 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 549 CRIV 560
I+
Sbjct: 143 SEII 146
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGNDP---YAFLEF 335
++VGNL +TE L T F QIG V+ +I+R+ +AF+ F
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical
protein K03B4.1 protein.
Length = 388
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 183 DESH-PKTLYVGNLDPSVTEVFLCTLFGQ 266
D SH P T VGN P++T FL T FG+
Sbjct: 193 DSSHFPLTYLVGNSLPAITSPFLKTSFGE 221
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
D+ + +YV N+ SVTE L FG G + KI+
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKIL 232
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVK 281
TLYVGNL E + LFG+ GDV+
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVR 64
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 189 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 344
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 189 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 344
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 423 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+PGN+ T H+ V +L P+I+ ++R+ F FG I
Sbjct: 120 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRI 153
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 423 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+PGN+ T H+ V +L P+I+ ++R+ F FG I
Sbjct: 265 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRI 298
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 471 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 343
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 471 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 343
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 471 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 343
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 471 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 343
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 344
+Y+G L +++E + +F Q G+V +IR+ F C+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 471 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 343
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+TL++ + ++ E L G+ K+I GN A++ M
Sbjct: 525 RTLWLKKIPTNIVENDLKQAVESCGEASRVKVI---GNRACAYITMENRRSANDVVSKMR 581
Query: 378 KRVVLDKEMKVNWATSPG 431
+ V K +KV WA SPG
Sbjct: 582 EVSVAKKMVKVYWARSPG 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,508
Number of Sequences: 27780
Number of extensions: 260434
Number of successful extensions: 812
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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