Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j20
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 87 6e-18
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 84 7e-17
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 81 4e-16
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 81 7e-16
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 68 5e-12
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 65 3e-11
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 64 5e-11
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 64 6e-11
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 63 1e-10
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 58 4e-09
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 58 4e-09
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 58 5e-09
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 57 9e-09
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 57 9e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 55 3e-08
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 2e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 51 5e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 48 3e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 3e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 9e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 43 2e-04
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 42 4e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 40 9e-04
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 40 9e-04
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 40 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 39 0.002
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 39 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At4g10610.1 68417.m01735 RNA-binding protein, putative 39 0.003
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 39 0.003
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 39 0.003
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.005
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 38 0.006
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 38 0.006
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.008
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 37 0.008
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.014
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.014
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.014
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.014
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 36 0.025
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 35 0.033
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 35 0.033
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.033
At5g24440.1 68418.m02880 RNA-binding protein, putative 34 0.075
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 34 0.075
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.075
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.100
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.13
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.17
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.17
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.17
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.17
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 0.23
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 32 0.23
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 32 0.30
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 32 0.30
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 32 0.30
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.40
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 0.40
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.53
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.53
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 0.53
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 0.53
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 0.53
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 31 0.53
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 31 0.53
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.53
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.53
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.53
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 0.70
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 31 0.70
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.70
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.70
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.70
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 0.93
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 0.93
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 0.93
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 30 1.2
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 1.2
At1g05400.1 68414.m00548 hypothetical protein contains Pfam prof... 30 1.2
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 1.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 1.6
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 1.6
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.1
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.1
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.1
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.1
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 29 2.1
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 29 2.1
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 2.1
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.8
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.8
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 2.8
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 2.8
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 2.8
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 29 2.8
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 29 2.8
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 2.8
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 2.8
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 2.8
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 2.8
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 3.7
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 3.7
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 28 3.7
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 3.7
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 3.7
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 3.7
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 3.7
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 5.0
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 6.5
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 27 6.5
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 27 6.5
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 27 6.5
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 6.5
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 6.5
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 6.5
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 27 8.7
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 87.4 bits (207), Expect = 6e-18
Identities = 43/126 (34%), Positives = 71/126 (56%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 543 SNCRIV 560
S+ R++
Sbjct: 175 SDARVM 180
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +3
Query: 186 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 353
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 319
Query: 354 XXXXXXMNKRVVL-DKEMKVNWATSP 428
N + L ++++ +W P
Sbjct: 320 ALAIQMGNAQPFLFSRQIRCSWGNKP 345
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 83.8 bits (198), Expect = 7e-17
Identities = 42/122 (34%), Positives = 68/122 (55%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 543 SN 548
S+
Sbjct: 175 SS 176
Score = 35.9 bits (79), Expect = 0.019
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +3
Query: 186 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 353
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 323
Query: 354 XXXXXXMNKRVVL-DKEMKVNWATSP 428
N + L ++++ +W P
Sbjct: 324 ALAIQMGNAQPFLFSRQIRCSWGNKP 349
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 81.4 bits (192), Expect = 4e-16
Identities = 44/126 (34%), Positives = 70/126 (55%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D S +++YVGN+ VTE L +F G V+ K+IR+ + Y F+ +
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALA 112
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 543 SNCRIV 560
S+ R++
Sbjct: 171 SDARVM 176
Score = 34.3 bits (75), Expect = 0.057
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 374
T+YVGNL P VT++ L F +G ++ ++ R+ G + F+ + H
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKG---FGFVRYNTHPEAALAIQMG 322
Query: 375 NKRVVL-DKEMKVNWATSP 428
N + L ++++K +W P
Sbjct: 323 NTQPYLFNRQIKCSWGNKP 341
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 80.6 bits (190), Expect = 7e-16
Identities = 44/126 (34%), Positives = 70/126 (55%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D S +++YVGN+ VTE L +F G V+ CK+IR+ + Y F+ +
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLA 107
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 542
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ +L F+ +
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 543 SNCRIV 560
S+ R++
Sbjct: 166 SDARVM 171
Score = 35.1 bits (77), Expect = 0.033
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 374
T+YVGNL P V++V L F +G ++ ++ R+ G + F+ ++ H
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG---FGFVRYSTHVEAALAIQMG 317
Query: 375 NKRVVLD-KEMKVNWATSP 428
N L ++MK +W + P
Sbjct: 318 NTHSYLSGRQMKCSWGSKP 336
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P D S ++VG++ ++ +L+E FA G + +C+++R
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR 87
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 67.7 bits (158), Expect = 5e-12
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCH 344
N G ++L++G+L P + E +L +FG G+ K+IR N + Y F+EF H
Sbjct: 72 NPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Query: 345 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 518
N + E ++NWA + + H +FVGDL+P++ ++L E
Sbjct: 132 ATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 519 AF-APFGEISNCRIV 560
F A + + ++V
Sbjct: 192 TFKAVYSSVKGAKVV 206
Score = 40.7 bits (91), Expect = 7e-04
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 353
E T++VG+L P VT+ L F + VKG K++ R G Y F+ F
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 354 XXXXXXMNKRVVLDKEMKV--------------NWATSPGNQPKTDTSNHHHIFVGDLSP 491
MN + + M+ ++ + GN ++D +N IFVG +
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQ 287
Query: 492 EIETNILREAFAPFGEISNCRI 557
+ + L+ F FGE+ + +I
Sbjct: 288 SVTEDDLKSVFGQFGELVHVKI 309
Score = 40.3 bits (90), Expect = 9e-04
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 186 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXX 359
ES P T++VG +D SVTE L ++FGQ G++ KI P F+++
Sbjct: 272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAGKRCGFVQYANRACAEQ 328
Query: 360 XXXXMNKRVVLDKEMKVNWATSPGNQ 437
+N + + ++++W SP N+
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNK 354
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 429 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
G+Q +++GDL P ++ N L F GE + +++R
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIR 113
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCH 344
N G S K+L++G+L + E ++ ++F Q G+ K+IR ++ Y F+EF H
Sbjct: 52 NPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSH 111
Query: 345 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNILR 515
N + E ++NWA + + + T H IFVGDL+PE+ +L
Sbjct: 112 SVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 516 EAFA-PFGEISNCRIV 560
+ F +G + ++V
Sbjct: 172 DTFKNVYGSVKGAKVV 187
Score = 43.6 bits (98), Expect = 9e-05
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 353
E T++VG+L P VT+ L F + G VKG K++ R G Y F+ F
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKT--------------DTSNHHHIFVGDLSP 491
MN + + M++ A + P + N+ IFVG L
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 492 EIETNILREAFAPFGEISNCRI 557
+ + L+ F FGE+ + +I
Sbjct: 270 NVTDDELKSIFGQFGELLHVKI 291
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +3
Query: 171 ANMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHX 347
AN GD + + T++VG LD +VT+ L ++FGQ G++ KI P F+++
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKA 306
Query: 348 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQ 437
+N + + ++++W SP Q
Sbjct: 307 SAEHALSVLNGTQLGGQSIRLSWGRSPNKQ 336
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 429 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
G+Q S+ +++GDL ++ N + FA GE ++ +++R
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIR 93
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +3
Query: 177 MGDESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHX 347
+ D++HP + LY G+LDP VTE L LF + +V ++ R+ YA++ F+
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 348 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 527
+N + D+ +++ + P T S +IF+ +L I+ L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLS---NRDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 528 PFGEISNCRI 557
FG I +C++
Sbjct: 158 SFGTILSCKV 167
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
N ++S LY+ NLD SV + L +F + G+V K++ P
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 64.1 bits (149), Expect = 6e-11
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP--GN-DPYAFLEFTCHXXXXXXXX 368
+TL++G+L V E +L + F Q G++ K+IR G + Y F+EF H
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 369 XMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFGE 539
N + E+ ++NWA S G+ K D H IFVGDL+P++ +L+E F +
Sbjct: 84 TYNGTQMPGTELTFRLNWA-SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 540 ISNCRIV 560
+ ++V
Sbjct: 143 VRGAKVV 149
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
T+ V NLD +VTE L F Q+G+V KI P Y +++F M
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 381 RVVLDKEMKVNWATSPG 431
+V+ + ++++W+ +PG
Sbjct: 295 QVIGQQAVRISWSKNPG 311
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 62.9 bits (146), Expect = 1e-10
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +3
Query: 186 ESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXX 356
++HP + LYVG+LDPSV E L LF Q+ V ++ R+ + YA++ F
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 357 XXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 536
+N + D+ +++ + P T S ++F+ +L I+ L E F+ FG
Sbjct: 100 RAMESLNYAPIRDRPIRIMLS---NRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Query: 537 EISNCRI 557
I +C++
Sbjct: 157 TILSCKV 163
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
LY+ NLD SV + L +F + G+V CK++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM 360
Score = 30.3 bits (65), Expect = 0.93
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXXXXXXMN 377
+YV NL +T+ L FG+ GD+ +++ + GN + F+ F MN
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 378 -------------KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 518
+ D+E ++ + + ++++ +L + L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 519 AFAPFGEISNCRIV 560
F+ +G +++C+++
Sbjct: 347 MFSEYGNVTSCKVM 360
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 58.0 bits (134), Expect = 4e-09
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 362
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 363 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 527
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 58.0 bits (134), Expect = 4e-09
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 362
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 363 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 527
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 381 RVVLDKEMKVNWATSPGN-QPKTDTSN 458
V+ + ++++W +P N QP+ N
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGN 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 368
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 369 XMNKRVVLDKEMKVNWAT---SPGNQ-------------PKTDTSNHHHIFVGDLSPEIE 500
MN + M++ AT + G Q P+ D N IFVG L +
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTT-IFVGGLDSSVT 316
Query: 501 TNILREAFAPFGEISNCRI 557
L++ F FGEI + +I
Sbjct: 317 DEDLKQPFNEFGEIVSVKI 335
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 57.6 bits (133), Expect = 5e-09
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXX 350
G KTL+VG+L + E +L + F G+V K+IR ++ Y F+EF
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 351 XXXXXXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 521
+ V+ D+ ++NWA+ S G + + +FVGDLSP++ +L E
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 522 FAP-FGEISNCRIV 560
F+ + + + ++V
Sbjct: 222 FSDRYPSVKSAKVV 235
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXX 365
ES T++VG +DP V + L F Q G+V KI P F++F
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVGKGCGFVQFADRKSAEDAI 373
Query: 366 XXMNKRVVLDKEMKVNWATSPGNQPKTDT 452
+N V+ ++++W SP Q + D+
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDS 402
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 411 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
N + G+Q +++N IFVG + P++ LR+ F+ FGE+ + +I
Sbjct: 305 NGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI 352
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 56.8 bits (131), Expect = 9e-09
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 368
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 369 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 536
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 537 EISNCRIV 560
+ ++V
Sbjct: 181 SVKGAKVV 188
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
T++VG LD SVT+ L +F Q G++ KI P F++F+ +N
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNG 318
Query: 381 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 467
+ ++++W SP N+ D S ++
Sbjct: 319 VQLGGTTVRLSWGRSPSNKQSGDPSQFYY 347
Score = 37.5 bits (83), Expect = 0.006
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 350
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 488
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 489 PEIETNILREAFAPFGEISNCRI 557
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 417 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
A P QP T +++GDL ++ N L FA GE+ + +++R
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIR 95
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 56.8 bits (131), Expect = 9e-09
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 368
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 369 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 536
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 537 EISNCRIV 560
+ ++V
Sbjct: 181 SVKGAKVV 188
Score = 37.5 bits (83), Expect = 0.006
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 350
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 488
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 489 PEIETNILREAFAPFGEISNCRI 557
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 338
T++VG LD SVT+ L +F Q G++ KI P F++F+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFS 304
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 417 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
A P QP T +++GDL ++ N L FA GE+ + +++R
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIR 95
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMN 377
++V NL SVT L +F + G++ CK+ E G Y F++F +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
+V DKE+ V ++ K + + ++++ +L ++ ++LRE FA FG+I + I
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE-EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 558 VR 563
+
Sbjct: 233 AK 234
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Frame = +3
Query: 171 ANMGDESHPKT--LYVGNLDPSVTEVFLCTLFGQ---IGDVKGCKIIREPGNDPYAFLEF 335
A+ S P T LYVG+L PSVTE L F + + V+ CK + Y + F
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
Query: 336 TCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 515
N ++ K ++V W+ + + N +FV +L + +L+
Sbjct: 73 LSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNAVLQ 129
Query: 516 EAFAPFGEISNCRI 557
+ F FG I +C++
Sbjct: 130 DMFKKFGNIVSCKV 143
Score = 31.5 bits (68), Expect = 0.40
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
++VGDL P + IL +AFA F +++ R+ +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCK 57
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 368
KTL+VG+L + E +L T F +V K+IR ++ Y F+EF
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 369 XMNKRVVLDKEM--KVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 527
+ + + E ++NWA+ S G + ++ IFVGDL+P++ +L E FA
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFA 234
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +3
Query: 174 NMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXX 350
+M D ES+ T++VG LD VTE L F G+V KI P F++F
Sbjct: 318 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQS 374
Query: 351 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN 458
+N V+ ++++W SP Q ++D+ N
Sbjct: 375 AEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
Score = 38.3 bits (85), Expect = 0.004
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Frame = +3
Query: 201 TLYVGNLDPSVTE-VFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 368
+++VG+L P V++ V L T G+ VKG K++ + + Y F+ F
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 369 XMNKRVVLDKEMKVNWATSP---------------------GNQPKTD-TSNHHHIFVGD 482
MN ++M+V AT GN +D SN+ IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 483 LSPEIETNILREAFAPFGEISNCRI 557
L ++ L + F+ FGE+ + +I
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKI 358
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXX 353
+ + T+YVG LD ++E L LF Q G V + ++ + Y F+E+
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
+N + K ++VN A+ Q K ++F+G+L P+++ +L + F+ F
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 534 GEI-SNCRIVR 563
G I SN +I+R
Sbjct: 136 GVIASNPKIMR 146
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 51.2 bits (117), Expect = 5e-07
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 362
KT++VG+L + E +L + F + ++ K+IR N + Y F+EF H
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 363 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 527
N + D+ ++NWA+ S G + + IFVGDL+P++ +L E F+
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 381 RVVLDKEMKVNWATSPGN-QPKTDTSN 458
V+ + ++++W +P N QP+ N
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGN 390
Score = 31.1 bits (67), Expect = 0.53
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 368
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 369 XMNKRVVLDKEMKVNWAT---------SPGNQP-------KTDTSNHHHIFVGDLSPEIE 500
MN + M++ AT G P + DT N IFVG L +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTT-IFVGGLDSSVT 318
Query: 501 TNILREAFAPFGEISNCRI 557
L++ F+ FGEI + +I
Sbjct: 319 DEDLKQPFSEFGEIVSVKI 337
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 48.4 bits (110), Expect = 3e-06
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Frame = +3
Query: 177 MGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFT 338
+G+ H +LYVG+L P VTE L F V + R YA++ F
Sbjct: 11 LGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFD 70
Query: 339 CHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 518
+N + K M++ W+ + + +++V +L I ++ L
Sbjct: 71 SPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLER 130
Query: 519 AFAPFGEISNCRIV 560
F PFG I +C++V
Sbjct: 131 MFCPFGSILSCKVV 144
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCHXXXXXXXXXMNK 380
LYV NLD S+T L +F G + CK++ E G + F++F ++
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 381 RVVLDKEMKV-NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
+V K++ V + + +++V +L + + L F+ +G +S+ +
Sbjct: 174 SMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV 233
Query: 558 VR 563
+R
Sbjct: 234 MR 235
Score = 32.7 bits (71), Expect = 0.17
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Frame = +3
Query: 141 VKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE------ 302
V K I++ A M +YV NL +VT+ L TLF Q G V ++R+
Sbjct: 183 VAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR 242
Query: 303 ---------PGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTS 455
P N A +E C + K + D+ ++ N
Sbjct: 243 GFGFVNFCNPENAKKA-MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM 301
Query: 456 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+++V +LS + LRE F +G+I + +++
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVM 336
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 48.4 bits (110), Expect = 3e-06
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXX 353
G++ +YV NL S+++ L +FG+ G C I+R E + + F+ F
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPE 494
+N + DKE V A + D S +++V +L
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 495 IETNILREAFAPFGEISNCRIVR 563
+ + LRE FAPFG I++C+++R
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMR 360
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 371
+LYVG+LD +VT+ L F Q G V ++ R+ Y ++ +
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N + + ++V ++ + K+ N IF+ +L I+ L E F+ FG I +C
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 552 RI 557
++
Sbjct: 163 KV 164
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 377
+++ NLD S+ L F G + CK+ +P Y F+++ +N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 378 KRVVLDKEMKVN-WATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 554
++ DK++ V + P + +++V +LS + L + F FG ++C
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 555 IVR 563
I+R
Sbjct: 255 IMR 257
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXX 356
D+S LYV NLD SVT+ L F G + CK++R+P + F+ F+
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEAT 381
Query: 357 XXXXXMNKRVVLDKEMKV 410
MN ++++ K + V
Sbjct: 382 RAITEMNGKMIVTKPLYV 399
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 43.6 bits (98), Expect = 9e-05
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 371
+LYVG+LD +VT+ L F ++ V ++ R+ + Y ++ ++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N + K +++ +++ + ++ N +FV +L ++ L EAF+ G I +C
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 552 RI 557
++
Sbjct: 164 KV 165
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 377
+YV NL + T+ L T FGQ G + ++R+ + F+ F +N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 378 KRVVLDKEMKVNWATSPGN----------QPKTDTSNHH---HIFVGDLSPEIETNILRE 518
+ DKE V A Q +D N +++V +L + LRE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 519 AFAPFGEISNCRIVR 563
FA FG I++C+++R
Sbjct: 347 LFAEFGTITSCKVMR 361
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXX 353
G++ LYV NLD +VT+ L LF + G + CK++R+P + F+ F+
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Query: 354 XXXXXXMNKRVVLDKEMKV 410
MN ++V K + V
Sbjct: 382 SRVLNEMNGKMVGGKPLYV 400
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXXMN 377
++V NLD S+ LC +F G V CK+ R+ + Y F++F N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
++ ++ + V S G K+ +++V +L L+ F FGEI++ +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFT--NVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 558 VR 563
++
Sbjct: 151 MK 152
Score = 40.3 bits (90), Expect = 9e-04
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXXXXXXXXMN 377
+YV NL + T+ L LFG+ G++ +++ E + + F+ F MN
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 378 KRVVLDKEMKVNWATSPGNQPK--------------TDTSNHHHIFVGDLSPEIETNILR 515
VV +KE+ V A N+ + T +++V +L ++ L
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLE 240
Query: 516 EAFAPFGEISNCRIV 560
E F+ FG I++C+++
Sbjct: 241 ELFSEFGTITSCKVM 255
Score = 36.3 bits (80), Expect = 0.014
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 377
LYV NLD SV L LF + G + CK+ + G + F+EF+ MN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 378 KRVVLDKEMKVNWA 419
++V +K + V+ A
Sbjct: 285 GKMVGNKPIYVSLA 298
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 438 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P S ++FV +L I+ L + F+ FG++ +C++ R
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVAR 64
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 338
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF+
Sbjct: 123 EDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFS 175
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.7 bits (91), Expect = 7e-04
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 374
L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 375 NKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNILREAFAPFGEIS 545
N V + + VN A G++P+ + I+VG+L ++++ L F+ G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 546 NCRIV 560
+ R+V
Sbjct: 235 DARVV 239
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEF 335
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEF 187
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 338
+T+YV +LD VTE L LF G V C+I +P + +AF+EFT
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFT 220
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +3
Query: 183 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-------YAFLEF 335
D+ P+T LYVGNL P V E FL FG+ G + KI+ P D F+ F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM-WPRTDEEKRRQRNCGFVSF 230
Query: 336 TCHXXXXXXXXXMNKRVVLDKEMKVNW 416
M +V + E+K+ W
Sbjct: 231 MNRADGQAAKDEMQGIIVYEYELKIGW 257
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 465 HIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+++VG+LSP+++ N L F FG I++ +I+
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIM 211
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Frame = +3
Query: 171 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTC 341
A + S L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 342 HXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNIL 512
N+ + + + VN A G++P+ + ++VG+L +++ L
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 513 REAFAPFGEISNCRIV 560
+ F+ G++ R+V
Sbjct: 261 EQLFSEHGKVVEARVV 276
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXXXXXXXMNK 380
++VG L T FG+ G++ I+++ P F T +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 381 RVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+++ K++++ G+ D IFVG + ++ + +E F FGE+ +I+
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK-IFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 561 R 563
R
Sbjct: 163 R 163
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 195 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXX 365
P +YVGNL +VT+ L LF + G V K+ R PG + F+ F+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 366 XXMNKRVVLDKEMKVNWA 419
+N ++ ++++VN A
Sbjct: 236 VALNNSLLEGQKIRVNKA 253
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 374
LY GNL +V L + + + +++ R+ G +AF+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 375 NKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+ L + +KVN+A P N+ H +FVG+LS + + L AF G++
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGA 206
Query: 552 RIV 560
R+V
Sbjct: 207 RVV 209
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 344
L+VGNL +VT L F + GDV G +++ + F C+
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCY 225
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 338
+T+YV ++D VTE L LF G V C+I +P + +AF+EFT
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFT 197
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXX 356
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 357 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 524
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTK--KIFVGGIPSTVTEDELKDFF 129
Query: 525 APFGEISNCRIVR 563
A +G + +++R
Sbjct: 130 AKYGNVVEHQVIR 142
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 135 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 302
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Frame = +3
Query: 180 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXX 356
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 357 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 524
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTK--KIFVGGIPSTVTEDELKDFF 129
Query: 525 APFGEISNCRIVR 563
A +G + +++R
Sbjct: 130 AKYGNVVEHQVIR 142
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 135 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 302
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 338
D+ +T+YV ++D VTE L +F G V C++ +P + +AF+EFT
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFT 216
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 37.5 bits (83), Expect = 0.006
Identities = 27/119 (22%), Positives = 54/119 (45%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+ L+V N+D S+ + L LF Q GDV+ + N + + + ++
Sbjct: 211 RILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGK--NRGFIMVSYYDIRAAQKAARALH 268
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 554
R++ +++ + ++ P PK + S+ ++V +L I L F+ +GEI R
Sbjct: 269 GRLLRGRKLDIRYSI-PKENPK-ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR 325
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 37.5 bits (83), Expect = 0.006
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Frame = +3
Query: 189 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXX 362
S P L+VG + T FG+ G+V I+ R GN P F T
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGN-PRGFGFVTFADSAVAE 121
Query: 363 XXXMNKRVVLDKEMKVNWATSPGNQPKTD---TSNHHHIFVGDLSPEIETNILREAFAPF 533
V+ D+++ + T P TD S IFVG L P +E + L+ F +
Sbjct: 122 KVLEEDHVIDDRKVDLK-RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVY 180
Query: 534 GEISNCRIV 560
G+I +I+
Sbjct: 181 GDIIEHQIM 189
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
IFVG LSPE+ L AF+ FG+I +C+I+
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
++VG L P VT+ L F + GD+ C+I+ R+ G + F+ F M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 375 NKRVVLDKEMKVNWA 419
+ R D+ + VN A
Sbjct: 69 HGRDFGDRVISVNRA 83
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
D+ LYV NLDPS+++ L +F G V K++R+P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 167
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+YVGNLDP VTE L F G V+ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG--YAFLDF 45
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+YVGNLDP VTE L F G ++ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG--YAFLDF 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 35.5 bits (78), Expect = 0.025
Identities = 25/119 (21%), Positives = 49/119 (41%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+TL VGN+ +V + L LF Q GD++ + N + + + +
Sbjct: 217 RTLLVGNISSNVEDYELKVLFEQFGDIQALHTACK--NRGFIMVSYCDIRAAQNAARALQ 274
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 554
+++ ++ + ++ S N + DTS + V +L I L +GE+ R
Sbjct: 275 NKLLRGTKLDIRYSISKENPSQKDTSK-GALLVNNLDSSISNQELNRLVKSYGEVKEIR 332
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.033
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +3
Query: 192 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 368
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 369 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 549 CR 554
R
Sbjct: 282 IR 283
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 381 RVVLDKEMKVNWATSPG 431
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.033
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +3
Query: 192 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 368
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 369 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 549 CR 554
R
Sbjct: 282 IR 283
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 381 RVVLDKEMKVNWATSPG 431
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
IFVG LSP + +L+EAF FG+I + +V
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVV 68
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 338
+T+YV ++D VTE L +LF G V C++ + + +AF+EFT
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFT 184
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 33.9 bits (74), Expect = 0.075
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +3
Query: 183 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII-----REPGNDPY-AFLEFT 338
D+ P+T LYV NL V E FL FG+ G + KI+ E + + F+ F
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 339 CHXXXXXXXXXMNKRVVLDKEMKVNW 416
M +V + E+K+ W
Sbjct: 240 NRADGEAAKEKMQGIIVYEYELKIGW 265
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.9 bits (74), Expect = 0.075
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Frame = +3
Query: 177 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 344
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 345 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNI 509
NK+ + + + G + D + H +FVG L +
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 510 LREAFAPFGEISNCRIVR 563
++ F+ +G I + +I+R
Sbjct: 125 VQSLFSEYGTIKDLQILR 142
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.5 bits (73), Expect = 0.100
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Frame = +3
Query: 177 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 344
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 345 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF 524
NK+ + + + G + + H +FVG L + ++ F
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLE----HKLFVGMLPKNVSETEVQSLF 120
Query: 525 APFGEISNCRIVR 563
+ +G I + +I+R
Sbjct: 121 SEYGTIKDLQILR 133
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 453 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
S+ +F+G +S + + N+LRE F+ FGE+ ++R
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 459 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
H IFV L + +T L EAF +GEI +C+ V
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAV 172
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 459 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
H IFV L + +T L EAF +GEI +C+ V
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAV 172
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 459 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
H IFV L + +T L EAF +GEI +C+ V
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAV 172
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 374
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 375 NKRVVLDKEMKVNWATSPGNQPKT 446
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+FVG LS + + L++AF FGE++ ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 374
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 375 NKRVVLDKEMKVNWATSPGNQPKT 446
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+FVG LS + + L++AF FGE++ ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
+L + NL+P+V+ L +F G+VK ++ P F+EF MN
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEVK--QVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
Query: 381 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 467
+V+ K M + ++ G K ++H H
Sbjct: 242 KVISGKPMVIQFSRPGGLTKKLFFASHFH 270
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 362
D+ KTLYVG L+ + E + F G+++ +I+ + AF+ +T
Sbjct: 223 DDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKA---CAFVTYTSREGAEKA 279
Query: 363 XXXMNKRVVLD-KEMKVNWATSPGNQ 437
++ R+V++ + +K+ W +Q
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ 305
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
++VG+LSP ++LREAF+ +G + + ++R
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMR 36
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCH 344
+YVGNL P+ T+ L F G+V ++R+ D + F+ ++ H
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSH 54
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 456 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
N + +F GDL E+ ++L +AFA F + +++R
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIR 170
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRI 557
+F+G LS ++ L++AF+ FGE++ RI
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRI 72
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.9 bits (69), Expect = 0.30
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +3
Query: 195 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXX 365
P ++VG L TEV + L G ++G ++ RE GN YAF +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Query: 366 XXMNKRVVLDKEMKVNWATSPGNQPKTD 449
+N + DK + V A QPK +
Sbjct: 434 AALNGIKMGDKTLTVRRAIQGAIQPKPE 461
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCR 554
++VG L+ E+ +IL AF PFG+I + +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVK 43
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
TLYVG L V E L F GD+K K + N + F
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGF 58
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 380
TL V NL PSV+ L +FG G++K +I P + F+EF +N+
Sbjct: 223 TLVVFNLAPSVSNRDLENIFGVYGEIK--EIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 381 RVVLDKEMKVNWATSPG 431
+ K +K+ + G
Sbjct: 281 TEIAGKRIKLEHSRPGG 297
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 426 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
P K + +FVG LS + LRE + +G I N R+VR
Sbjct: 52 PSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVR 97
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 435 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+P+ + S + +FV LS + LR AFA FGE+++ ++V
Sbjct: 49 RPQAEPSTN--LFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.1 bits (67), Expect = 0.53
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +3
Query: 174 NMGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 338
N G S P+ +LY+ NLD V+E L +F G V + ++ + +AF+EF
Sbjct: 6 NHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
Query: 339 CHXXXXXXXXXMNKRVVLDK 398
M+ R++ K
Sbjct: 66 SADSAGRAMLHMDGRLIGQK 85
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.1 bits (67), Expect = 0.53
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 453 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
S+ +FVG +S E + + LRE F +GE+S ++R
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMR 39
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
+FV LS LR+ F+PFG+I R++R
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIR 40
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 159 RLR*ANMGDESHPKTLYVG-NLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY 320
+LR +N + HP+ + N +P E + LFG I +K I + + PY
Sbjct: 10 QLRESNNNQKVHPQPMEESINQNPEAMEALISNLFGNISSLKSAYIELQSAHTPY 64
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
++VG+LD +E L +FG +G+V +I++ P
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +3
Query: 309 NDPYAFLEFTCHXXXXXXXXXMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVG 479
N YAFLEF+ + K+ V+ +K KV++ S + + IF+
Sbjct: 337 NRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFID 396
Query: 480 DLSPEIETNILREAFAPFGEISNCRIVR 563
L P +R+ P+G++ + R
Sbjct: 397 GLLPSWNEERVRDLLKPYGKLEKVELAR 424
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.1 bits (67), Expect = 0.53
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXXXXXXXXXM 374
L+V L+P + L T+F + G V +IR+ G+ YAF+EF M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 375 NKRVVLDKEMKVNWATS 425
+ ++ D+ + V+++ S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 420 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
TS P DT+ H +FVG L+ E T+ +R F FGEI I+
Sbjct: 4 TSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.7 bits (66), Expect = 0.70
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+F+G ++ ++ + LREAF +GE+ + R++
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
L+VG+L P TE L LFG+ GD+ + G +AF+ +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRG---FAFIYY 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.3 bits (65), Expect = 0.93
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
K L V NL PS+T L LF G V C I + A++E++ + +N
Sbjct: 351 KFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSI---TDSKHIAYIEYS-NSEEATAALALN 406
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDTSN 458
V + + V A S ++P ++ S+
Sbjct: 407 NTEVFGRALNVEIAKSLPHKPSSNNSS 433
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 0.93
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXX 371
+ L+V NL S++ + LFGQ G V +IIR+ N +AF+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 372 MNKRVVLDKEMKVNWA--------TSPGNQPK-TDTSNHHHIFVGDLSPEIETNILREAF 524
+ V + + V++A SP + P H ++V +L+ + + LRE F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 525 --APFGEISNCRIV 560
A F +S R+V
Sbjct: 215 TAADFNPVS-ARVV 227
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 180 GDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEF 335
G+E P T+ V L S+T L F ++G V+ C ++ G+D +AF++F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 429 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
GN TDT IFVG L+ E + + +R F FGEI ++
Sbjct: 12 GNNNTTDTKLTK-IFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
++VG + S E L F + G+V KII RE G +AF+ FT +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFT-STEEASNAMQL 94
Query: 375 NKRVVLDKEMKVNWATSPGN 434
+ + + + ++VN+AT G+
Sbjct: 95 DGQDLHGRRIRVNYATERGS 114
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
IFVG +S + LREAF+ +GE+ + +I+
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
>At1g05400.1 68414.m00548 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 161
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 245 PMYVVWSNRRCKRLQDYTGARK*PVCISRVYVSHG 349
P+YV W +RC DY R P CI R+ G
Sbjct: 13 PVYVYWDMKRCPVPDDYDARRVGP-CIKRILRKSG 46
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND 314
LYVGNL ++T L +FG+ G V +I+ + D
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTD 154
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +3
Query: 159 RLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFL 329
++R N P +Y GNL ++T L FG V G K+I R G + F+
Sbjct: 206 KIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFI 265
Query: 330 EFTCHXXXXXXXXXMNKRVVLDKEMKVNWAT 422
F MN V + +++N A+
Sbjct: 266 SFESAENVQSALATMNGVEVEGRALRLNLAS 296
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 302
TLYV NLD S+T + TLF G V ++++
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 459 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
H IFV L + + + L +AF +GEI +C+ V
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRI 557
+FVG+L +++ ++ + F+ FGE+ + RI
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 420 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
TS P DT+ + +FVG L+ E T+ +R F FGEI I+
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 420 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
TS P DT+ + +FVG L+ E T+ +R F FGEI I+
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 432 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
N P DT+ +FVG L+ E ++ LR+ F +GEI ++
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 375 NKRVVLDKEMKVNWA 419
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 441 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+ D + IFVG LS ++ L F +G+I+ C+I+
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 375 NKRVVLDKEMKVNWA 419
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 441 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+ D + IFVG LS ++ L F +G+I+ C+I+
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
+T+YVGNL + + + LF + G + + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEF 52
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 171 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 278
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 171 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 278
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 374
+ V NL S +E FL + FG+I +VK K + YAF++FT M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 375 NKRVVLDKEMKVNWATSPGNQ 437
++R+ + + ++ A PG +
Sbjct: 102 DRRMYNGRMIYIDIA-KPGKR 121
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.7 bits (61), Expect = 2.8
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 344
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 345 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 521
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 522 FAPFGEISNCRIVR 563
F FG + + ++R
Sbjct: 231 FLQFGHVEDVYLMR 244
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 2.8
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 344
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 345 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 521
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 522 FAPFGEISNCRIVR 563
F FG + + ++R
Sbjct: 231 FLQFGHVEDVYLMR 244
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+F+G LS + LR+AFA FG++ + +++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 375 NKRVVLDKEMKVNWATSPGNQPK 443
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+F+G LS + LR+AFA FG++ + +++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 374
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 375 NKRVVLDKEMKVNWATSPGNQPK 443
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEF 335
H +Y+G + TE L G IG+V +I+RE + YAF+ F
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTF 140
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 347 GGGHSAGRH-EQASGPRQGNEG*LGDESW 430
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 377
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 378 KRVVLDKEMKVNWATSPGN 434
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 377
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 378 KRVVLDKEMKVNWATSPGN 434
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 423 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
S +P + + ++++G L P +E + L F+ FGEI ++++
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 302
LY+G L P + + L LF G++ K+I++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKD 514
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 423 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 563
S +P + + ++++G L P +E + L F+ FGEI ++++
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 302
LY+G L P + + L LF G++ K+I++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKD 514
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV 560
+++G LSP + + L++AF+ F ++ R++
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVM 63
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXXXXXM 374
++YVG L +TE + +F G V KI+ R Y F+ F+ M
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 375 NKRVVLDKEMKVNWATSPGNQ 437
+ + + + ++VN T+ G +
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 411 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 557
N AT G T + IFVG L E + LR+ F FG I + I
Sbjct: 223 NPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Frame = +3
Query: 192 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXX 362
H +++G L V E L L +IG++ +++ R+ G+ YAF+ F
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 363 XXXMNKRVVLDKEMKVNWATSP-----GNQPKTDTSNHHHIFVGDLSPEIE 500
++ + K ++ + + + GN PK T + + D+ P +E
Sbjct: 174 IEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 174 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
N+ D TL++GNL ++ E L +L K KI+R+ F+EF
Sbjct: 225 NIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQE-RHTVCFIEF 277
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 471 FVGDLSPEIETNILREAFAPFGEI--SNCR 554
+VG+L + E N L+ AF+ FG++ SN R
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVR 40
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDV 278
T YVGNL+ E L F Q GDV
Sbjct: 9 TCYVGNLESDTEENDLKNAFSQFGDV 34
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVK 281
LY+ NLD V+ + LF ++GD+K
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLK 135
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 377
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 KRVVLDKEMKVNWATSPGN 434
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 377
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 KRVVLDKEMKVNWATSPGN 434
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 377
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 378 KRVVLDKEMKVNWATSPGN 434
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 359 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 261
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 453 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
S+ +IFV L + L+ AF +GEI+ C +V
Sbjct: 160 SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVV 195
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVK 281
T+Y+ NLD VT + L+ +IG++K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELK 134
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.1 bits (57), Expect = 8.7
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGN-DPYAFLEFTCHXXXXXXXXX 371
KTL+ GNL + + F + G+V ++ + G+ Y +EF
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEF-ASPEEAQKALE 442
Query: 372 MNKRVVLDKEMKVNWATSPG----NQP--KTDTSNHHHIFVGDLSPEI-ETNI---LREA 521
MN +++L ++++++ A G + P K + S I+V S + E I LR
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 522 FAPFGEISNCRI 557
F+ GE++ +
Sbjct: 503 FSKCGEVTRVHV 514
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,563
Number of Sequences: 28952
Number of extensions: 242790
Number of successful extensions: 873
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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