Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j19
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 155 3e-38
SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_59207| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_51903| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5) 32 0.45
SB_11589| Best HMM Match : DUF165 (HMM E-Value=4.6) 32 0.45
SB_5872| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5) 32 0.45
SB_922| Best HMM Match : DUF1532 (HMM E-Value=4.1) 32 0.45
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_11258| Best HMM Match : efhand (HMM E-Value=1.4e-08) 30 1.8
SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32) 29 4.1
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 29 4.1
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 28 5.5
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 5.5
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 28 7.2
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 7.2
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 7.2
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 28 7.2
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 27 9.6
SB_28351| Best HMM Match : Exo_endo_phos (HMM E-Value=0.041) 27 9.6
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 155 bits (376), Expect = 3e-38
Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 1/181 (0%)
Frame = +1
Query: 88 LLPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSL 267
L+P+ + WNK K ++ +EW+ EY LC ++KY+K D +L CG+S L
Sbjct: 5 LVPQKSNNLFGTEQWNKLM-KEVSRPYEWHSEYEILCDLMHKYVKLNDRLLRLACGDSKL 63
Query: 268 SADLYDVGYVNITNVDVSEVVIKQMKNVNKA-RTNMKFMCMDATRMSFEDEAFNVVLDKG 444
+LYDVGY NI +VD SE VIK+M+ N + + +M++ MD T + ++DE+FNVV DK
Sbjct: 64 GENLYDVGYRNIISVDSSEKVIKKMRKRNDSGKRDMEYTRMDVTDLKYDDESFNVVFDKQ 123
Query: 445 TLDALMPDATEETNAIIDKYFSEIKRVLKLGGRFVCISLLQSHILAKLMEGFCEKSWMFR 624
LD + +E+ +DK F+EI+RVLK+GGRF+ +L Q HIL KL+ F + W+ R
Sbjct: 124 WLDYTFTNTSEDILKKVDKTFAEIQRVLKVGGRFIVCTLAQDHILDKLLAHF-SQGWLVR 182
Query: 625 V 627
V
Sbjct: 183 V 183
>SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 122 bits (294), Expect = 2e-28
Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 6/185 (3%)
Frame = +1
Query: 91 LPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSSLS 270
LP+++ + +K+YWN F K FEW Y E L +++T D ILI GCGNS LS
Sbjct: 3 LPKNNSSYKDKEYWNNRFAKEDT--FEWCKSYKEFRHLLRGHVRTCDRILILGCGNSGLS 60
Query: 271 ADLYDVGYVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTL 450
D+Y+ GY +ITN+D S +VI+ MK A M++ MD T++ F +F+VV++K TL
Sbjct: 61 EDMYNEGYTDITNIDYSPIVIENMKRKCHAMRGMEWKVMDITKLDFPPNSFDVVIEKATL 120
Query: 451 DALMPDATEETNAIIDK------YFSEIKRVLKLGGRFVCISLLQSHILAKLMEGFCEKS 612
DAL+ + N ++ S++ +L+ G F+ I+ Q + + C +
Sbjct: 121 DALLVAEKDPWNPSVEALKTMECVLSKVSEILEPAGHFMSITFSQPNFRLPFLARSC-YN 179
Query: 613 WMFRV 627
W V
Sbjct: 180 WSISV 184
>SB_59207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 70.1 bits (164), Expect = 1e-12
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Frame = +1
Query: 115 SEKDYWNKFFRKRG-NKAFEWYGEYLELCGQLNKYIKTKDSILIT---GCGNSSLSADL- 279
S+ +W KF++ RG N FEW+ ++ ++ L+KYI KDS + T GCG S L
Sbjct: 23 SDMSFWEKFYKSRGPNNTFEWFLDFQDVHNSLDKYIH-KDSHINTLDLGCGTSEFCIQLF 81
Query: 280 -YDVGYVNITNVDVSEVVIKQMKNVNKAR----TNMKFMCMDATRMSFEDEAFNVVLDKG 444
Y G + +D SE I+ M+N+ + + + + F E F++++DKG
Sbjct: 82 YYLRGNCKVAGIDFSEEAIQVMRNLLRQHGLDDSVFSLHVGNVLDLPFSRECFDIIIDKG 141
Query: 445 TLDALMPDATEETNAIIDKYFSEIKRVLKLGGRFVCIS 558
T DA++ ET E RVLK G + S
Sbjct: 142 TADAVLRSPAAET--AFCAVLVEACRVLKSEGTILQFS 177
>SB_51903| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)
Length = 529
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+ + + + +ASG S+ P+S TL
Sbjct: 385 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 433
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 35 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 83
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 67 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 115
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 99 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 147
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 195 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDIRSKWPVSYVTL 243
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ D+++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 353 MASEDLRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 401
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K S+ TLL+++ S + +ASG S+ +S TL
Sbjct: 481 MASGDMRSKWLVSYVTLLVTQCVTSFNVYQGDMASGDTRSKCLVSYVTL 529
>SB_11589| Best HMM Match : DUF165 (HMM E-Value=4.6)
Length = 275
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+ + + + +ASG S+ P+S TL
Sbjct: 163 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 211
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 35 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 83
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 67 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 115
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 99 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 147
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 131 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 179
>SB_5872| Best HMM Match : Herpes_UL49_5 (HMM E-Value=3.5)
Length = 529
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+ + + + +ASG S+ P+S TL
Sbjct: 385 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 433
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 99 MANEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 147
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 195 MASEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDIRSKWPVSYVTL 243
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+++ + + +A+ S+ P+S TL
Sbjct: 67 MANEDMRSKWPVSYVTLLVTQCVTTFNVYQDGMANEDMRSKWPVSYVTL 115
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ D+++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 353 MASEDLRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 401
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K S+ TLL+++ S + +ASG S+ +S TL
Sbjct: 481 MASGDMRSKWLVSYVTLLVTQCVTSFNVYQGDMASGDTRSKCLVSYVTL 529
>SB_922| Best HMM Match : DUF1532 (HMM E-Value=4.1)
Length = 294
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ DM++K P S+ TLL+ + + + +ASG S+ P+S TL
Sbjct: 92 MASEDMRSKWPVSYVTLLVMQCVTTFNVYQGDMASGDIRSKWPVSYVTL 140
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 569 LCKSDMQTKRPPSFKTLLISEKYLSIMAFVSSVASGIRASRVPLSNTTL 423
+ D+++K P S+ TLL+++ + + +AS S+ P+S TL
Sbjct: 60 MASEDLRSKWPVSYVTLLVTQCVTTFNVYQDGMASEDMRSKWPVSYVTL 108
>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/77 (15%), Positives = 38/77 (49%)
Frame = -1
Query: 515 ISEKYLSIMAFVSSVASGIRASRVPLSNTTLNASSSKDILVASMHINFILVLALFTFFIC 336
I+ Y + + V++ + +R ++ ++ + D+ + + + N++ ++ + +C
Sbjct: 2 IATAYPTDLCIVTAYPTDLRIVTAYPTDLSIVTAYPTDLSIMTAYPNYLSIVTAYPTDLC 61
Query: 335 LITTSETSTFVIFTYPT 285
++T T ++ YPT
Sbjct: 62 IVTAYPTDLRIVTAYPT 78
>SB_11258| Best HMM Match : efhand (HMM E-Value=1.4e-08)
Length = 182
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 42 KATVKFLQTPNVYNEFTTEKSQRI 113
K TV+FLQ P+V++EF T +I
Sbjct: 105 KRTVQFLQLPSVFDEFDTNHDMKI 128
>SB_33292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 76 FIMNLLPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCG 201
F N++ R K + Y +K + +G +W+ E +LCG
Sbjct: 412 FFRNMVNRERKVCKSRFYDSKVKQLKGENPKKWWDEVKQLCG 453
>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
Length = 1556
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = +1
Query: 235 ILITGCGNSSLSADLYDVGYVNITNVDVSEVVIKQMKNV-NKARTNMKFMCMDATRMSFE 411
++ G G + L +GY N+ +D+S+ +M N+ + R +C +
Sbjct: 196 VMDAGAGTGIVGEHLQQLGYTNVDGLDISQ----EMLNIARQKRVYKNLICAGLSETEIA 251
Query: 412 DEAFNVVLDKGTLDALMPDATEETNAIIDKYFSEIKRVLKLGGRFVCISLLQ 567
+ A G + ++ T + E++R LK GG +C ++ Q
Sbjct: 252 EIA------DGQYEGIVCSGTITVAHVKAASLGELRRWLKPGG-IICFTIRQ 296
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 265 LSADLYDVGYVNITNVDVSEVVIKQMKNVNKARTNMKFMCMDATRMSFEDEA----FNVV 432
+S ++D T+V ++ ++ ++KN + N + M D T S DEA + V+
Sbjct: 217 MSEAMHDTDGPQFTDVQLNYEIMDKVKNNEETHPNYEIMSSDLTDHSSADEATHELYEVM 276
Query: 433 LDKGTLDALMPD 468
DK D M D
Sbjct: 277 GDKEEHDQNMYD 288
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +1
Query: 322 EVVIKQMKNVNKARTNMKFMCMDATRMSFEDEAFNVVLDKGTLDALMPDATEETNAIIDK 501
EVV ++ +++ A N+ + +R+ E++A +D+ +DA + E + D+
Sbjct: 207 EVVKAKVSDLSHAHANVFSLF---SRLGAENKALTSEIDE-FIDAQVSTLEEIRMNLKDE 262
Query: 502 YFSE---IKRVLKLGGRFVCISLLQSHILAKLMEGFCE 606
S+ IK+ L ++CIS+ + K E FC+
Sbjct: 263 VISDNGKIKKQLASQEDYLCISIANCNSCVKFAERFCQ 300
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 493 IDKYFSEIKRVLKLGGRFVCI 555
+D+ E+KRVLK GGRF I
Sbjct: 163 LDQLLGEVKRVLKPGGRFYFI 183
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 417 FIFKRHSRSIHAHKLHIGSGFVYVFHLFNNNFRDIHICYIYI 292
F + H I +H F Y+ HL+ ++R IH+ + I
Sbjct: 391 FTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHVSPLLI 432
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 417 FIFKRHSRSIHAHKLHIGSGFVYVFHLFNNNFRDIHICYI 298
F + H I +H F Y+ HL+ ++R IH ++
Sbjct: 211 FTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSHL 250
>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/98 (22%), Positives = 42/98 (42%)
Frame = +1
Query: 85 NLLPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCGQLNKYIKTKDSILITGCGNSS 264
N++ R K K Y + ++ K W+ E LCG +KT +S L +
Sbjct: 46 NIVNRERKGCRVKYYEPRMQHRKDEKPQTWWSEVKRLCG-----LKTTNSDLASQINIEG 100
Query: 265 LSADLYDVGYVNITNVDVSEVVIKQMKNVNKARTNMKF 378
+S D+ N+ N+ + E + + + R +++F
Sbjct: 101 IS-DMPPSEQANVINLTLLEPLEENKLPIPLERVSLEF 137
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 88 LLPRSHKEF--SEKDYWNKFFRKRGNKAFEWYGEYLELCGQLNKYIKTKDSILIT 246
LL + ++E +++++W +R KA E + + +E +L + I KD+ + T
Sbjct: 656 LLNKQYEEHLVADREFWENQEEERVRKAIEEHEKLVETSARLQRMIPDKDAFINT 710
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 400 MSFEDEAFNVVLDKGTLDALMPDATEET 483
M + AF+++ D+G +D PD TE+T
Sbjct: 1658 MGIYNPAFDMLDDEGPMDGNQPDTTEDT 1685
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 400 MSFEDEAFNVVLDKGTLDALMPDATEET 483
M + AF+++ D+G +D PD TE+T
Sbjct: 189 MGIYNPAFDMLDDEGPMDGNQPDTTEDT 216
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 76 FIMNLLPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCG 201
F N++ R K + Y +K + +G +W+ E LCG
Sbjct: 74 FFRNMVNRERKVCRSRFYDSKVKQLKGENPKKWWDEVKRLCG 115
>SB_28351| Best HMM Match : Exo_endo_phos (HMM E-Value=0.041)
Length = 607
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 76 FIMNLLPRSHKEFSEKDYWNKFFRKRGNKAFEWYGEYLELCG 201
F N++ R K + Y +K + +G +W+ E LCG
Sbjct: 419 FFRNMVNRERKVCRSRFYDSKVKQLKGENPKKWWDEVKRLCG 460
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,432
Number of Sequences: 59808
Number of extensions: 335571
Number of successful extensions: 998
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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