Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j18
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561...    27   6.6  
04_04_1442 + 33628102-33628246,33628352-33628494,33628618-336288...    27   8.8  

>03_06_0440 -
           33954726-33954809,33955141-33955475,33955929-33956106,
           33956205-33956285,33956629-33956740,33956831-33956931,
           33957001-33957174,33957313-33957486,33957683-33957765,
           33957852-33957912,33958069-33958251,33959630-33959848
          Length = 594

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 237 GIQKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPD 365
           G  K +   GG+   L  VQH R +Y          Y E HPD
Sbjct: 117 GQDKFVQVAGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPD 159


>04_04_1442 +
           33628102-33628246,33628352-33628494,33628618-33628831,
           33628925-33629159,33629285-33629372,33629526-33629885
          Length = 394

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 87  HMSAQELLKLGDEGRQKPFLNKYWPE--IIGVTFGIGTGMFLNFQTKRPVFSGIQK 248
           H +   L+    EG+Q+  + +Y     +  + FG+    FLN++T+  +  GI +
Sbjct: 134 HKNLVRLVGCCSEGQQRLLVYEYMKNKSLDKILFGVDGAPFLNWKTRHQIIIGIAR 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,136
Number of Sequences: 37544
Number of extensions: 243671
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)