Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j18
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)           28   5.1  
SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)            27   6.8  
SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_39778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 455 NNSIFNLHLTNWDPRFKQVTNLLTF 381
           N S+FN H+T+W+   K +T++  F
Sbjct: 27  NESVFNAHVTSWNDSDKLLTSIEIF 51


>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
          Length = 362

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 273 VSILSYVQHKRNEY----LAEKDAVYRHYIELHPDDFPVPERKKIGDLFEPW 416
           V+I  Y++ +  ++     + K A Y H ++    DF + E ++I DLF  W
Sbjct: 25  VNICKYIETEGKKFSTKEFSTKRARYNHLLDQELADFRILEVRQITDLFTIW 76


>SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)
          Length = 681

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 270 WVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDFPV-PERKKI 395
           W++     +  R+  + E D VY H++    DD+P+ PE  KI
Sbjct: 447 WMTDQELKEWGRHPCVVEVDMVYPHHLHDSHDDYPLAPESIKI 489


>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 118 PNFRSSWADICSDIFEIGNLLWFLQNQIRISEF 20
           P + S W ++C  +F  G L   + NQ ++ E+
Sbjct: 145 PEYFSPWEEVCERLFLSGILTLIILNQQQLPEY 177


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +3

Query: 315 LAEKDAVYRHYIELHPDDFPV----PERKKIGDLFEPWIP 422
           L  K++V  +   L P+DFP     P R    D F PW P
Sbjct: 276 LFAKESVSSNVHALGPEDFPSSVTSPSRPFFVDFFAPWCP 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,090
Number of Sequences: 59808
Number of extensions: 291127
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)