Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j18
         (509 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007323-1|AAH07323.1|  119|Homo sapiens NADH dehydrogenase (ubi...    54   3e-07
AF087899-1|AAP97198.1|  119|Homo sapiens NADH dehydrogenase prot...    54   3e-07
AF087659-1|AAD09754.1|  119|Homo sapiens NADH-ubiquinone oxidore...    54   3e-07
CR533448-1|CAG38479.1|  119|Homo sapiens NDUFC2 protein.               54   4e-07
AF369951-1|AAM21294.1|  119|Homo sapiens lung cancer oncogene 1 ...    54   4e-07

>BC007323-1|AAH07323.1|  119|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa protein.
          Length = 119

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTF-GIGTGMFLNFQTKRPVFS-GIQKH 251
           M    + + L  L DE R  P      P ++ + F G  +G+  N   +RP+ + G+ + 
Sbjct: 1   MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ 60

Query: 252 IIATGGWVSILSYVQHKRNEYL-AEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR 428
           ++    +     Y   KR +YL A +D     Y++LHP+DFP  ++K  G++FE + P+R
Sbjct: 61  LLYITAFF-FAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR 119


>AF087899-1|AAP97198.1|  119|Homo sapiens NADH dehydrogenase
           protein.
          Length = 119

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTF-GIGTGMFLNFQTKRPVFS-GIQKH 251
           M    + + L  L DE R  P      P ++ + F G  +G+  N   +RP+ + G+ + 
Sbjct: 1   MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ 60

Query: 252 IIATGGWVSILSYVQHKRNEYL-AEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR 428
           ++    +     Y   KR +YL A +D     Y++LHP+DFP  ++K  G++FE + P+R
Sbjct: 61  LLYITAFF-FAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR 119


>AF087659-1|AAD09754.1|  119|Homo sapiens NADH-ubiquinone
           oxidoreductase B14.5B subunit protein.
          Length = 119

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTF-GIGTGMFLNFQTKRPVFS-GIQKH 251
           M    + + L  L DE R  P      P ++ + F G  +G+  N   +RP+ + G+ + 
Sbjct: 1   MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAGLHRQ 60

Query: 252 IIATGGWVSILSYVQHKRNEYL-AEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR 428
           ++    +     Y   KR +YL A +D     Y++LHP+DFP  ++K  G++FE + P+R
Sbjct: 61  LLYITAFF-FAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR 119


>CR533448-1|CAG38479.1|  119|Homo sapiens NDUFC2 protein.
          Length = 119

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTF-GIGTGMFLNFQTKRPVFS-GIQKH 251
           M    + + L  L DE R  P      P ++ + F G  +G+  N   +RP+ + G+ + 
Sbjct: 1   MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ 60

Query: 252 IIATGGWVSILSYVQHKRNEYL-AEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR 428
           ++    +     Y   KR +YL A +D     Y++LHP+DFP  ++K  G++FE + P+R
Sbjct: 61  LLYITAFF-FAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR 119


>AF369951-1|AAM21294.1|  119|Homo sapiens lung cancer oncogene 1
           protein.
          Length = 119

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  MSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTF-GIGTGMFLNFQTKRPVFS-GIQKH 251
           M    + + L  L DE R  P      P ++ + F G  +G+  N   +RP+ + G+ + 
Sbjct: 1   MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNVIRRRPIATAGLHRQ 60

Query: 252 IIATGGWVSILSYVQHKRNEYL-AEKDAVYRHYIELHPDDFPVPERKKIGDLFEPWIPVR 428
           ++    +     Y   KR +YL A +D     Y++LHP+DFP  ++K  G++FE + P+R
Sbjct: 61  LLYITAFF-FAGYYLVKREDYLYAVRDREMFGYMKLHPEDFPEEDKKTYGEIFEKFHPIR 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,138,574
Number of Sequences: 237096
Number of extensions: 1366893
Number of successful extensions: 2426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2426
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)