Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j18
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical...    37   0.010
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    30   0.85 
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    30   1.1  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    29   1.5  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    29   1.5  

>AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.4 protein.
          Length = 139

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +3

Query: 207 NFQTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDFP-VPE 383
           N   K+P +  I   ++  G   +        R  +   +DAV  HY++LHP+DF    +
Sbjct: 56  NRWNKKPYYYAIVPRLLLIGAATAAGYAAGALRERHYQTRDAVIEHYMKLHPEDFDHFND 115

Query: 384 R--KKIGDLFEPWIPVR 428
           R  +    +  PW P R
Sbjct: 116 RSGRSFSQVLLPWYPRR 132


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 362 WV*FYIMPVYCILFC*IFIPFMLYIT*NADPTSSCNYMFL 243
           W+  Y+   +C+L   +  PF +Y+    DPT   NY +L
Sbjct: 5   WIYQYLPATFCVLAF-LVNPFFIYLIFTEDPTKFGNYRYL 43


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 151 LFRKGFCRPSSPNFRSSWADICSDIFEIGNLLWFLQNQIRISEF 20
           +FR  FC+  +P +  S+ +I SD+F++    ++    I  S F
Sbjct: 31  VFRLAFCKRKNPVYIVSFFNILSDVFQVSAATFYSAPSIITSSF 74


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 362 WV*FYIMPVYCILFC*IFIPFMLYIT*NADPTSSCNYMFL 243
           WV  YI  ++C+L   +  P  +Y+    +PT   NY FL
Sbjct: 5   WVFLYIPLIFCVLSF-LVNPVFIYLIFTENPTKFGNYRFL 43


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 156 WPEIIGVTFGI-GTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDA 332
           W E +  T  + G  + L+F    P FS  Q  +I   G V + +  Q+K     AE + 
Sbjct: 180 WDEYVIKTDKVDGDNLALSFYDVHPDFSVPQNAMIKINGKVELQALCQYKPAITPAEINY 239

Query: 333 VYRHYIELHPDDFPVPE 383
           + R Y E++    PV +
Sbjct: 240 MGRRYSEIYYPTVPVKD 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,941
Number of Sequences: 27780
Number of extensions: 239610
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)